Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1535

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1534 and PfGW456L13_1535 are separated by 215 nucleotidesPfGW456L13_1535 and PfGW456L13_1536 are separated by 16 nucleotidesPfGW456L13_1536 and PfGW456L13_1537 overlap by 1 nucleotides PfGW456L13_1534 - FIG00955330: hypothetical protein, at 1,686,325 to 1,687,881 _1534 PfGW456L13_1535 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 1,688,097 to 1,690,316 _1535 PfGW456L13_1536 - FOG: TPR repeat, at 1,690,333 to 1,691,070 _1536 PfGW456L13_1537 - Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C), at 1,691,070 to 1,691,405 _1537 Position (kb) 1688 1689 1690 1691Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1687.145 kb on + strand, within PfGW456L13_1534at 1687.146 kb on - strand, within PfGW456L13_1534at 1687.146 kb on - strand, within PfGW456L13_1534at 1687.146 kb on - strand, within PfGW456L13_1534at 1687.236 kb on + strand, within PfGW456L13_1534at 1687.573 kb on + strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.574 kb on - strand, within PfGW456L13_1534at 1687.577 kb on + strand, within PfGW456L13_1534at 1687.577 kb on + strand, within PfGW456L13_1534at 1687.577 kb on + strand, within PfGW456L13_1534at 1687.577 kb on + strand, within PfGW456L13_1534at 1687.577 kb on + strand, within PfGW456L13_1534at 1687.578 kb on - strand, within PfGW456L13_1534at 1687.578 kb on - strand, within PfGW456L13_1534at 1687.578 kb on - strand, within PfGW456L13_1534at 1687.578 kb on - strand, within PfGW456L13_1534at 1687.650 kb on - strand, within PfGW456L13_1534at 1687.761 kb on + strandat 1687.761 kb on + strandat 1687.762 kb on - strandat 1687.762 kb on - strandat 1687.762 kb on - strandat 1687.762 kb on - strandat 1687.762 kb on - strandat 1687.762 kb on - strandat 1687.762 kb on - strandat 1687.763 kb on + strandat 1687.763 kb on + strandat 1687.763 kb on + strandat 1687.763 kb on + strandat 1687.763 kb on + strandat 1687.764 kb on - strandat 1687.764 kb on - strandat 1687.764 kb on - strandat 1687.764 kb on - strandat 1687.764 kb on - strandat 1687.770 kb on - strandat 1687.797 kb on + strandat 1687.797 kb on + strandat 1687.797 kb on + strandat 1687.798 kb on - strandat 1687.798 kb on - strandat 1687.921 kb on + strandat 1687.921 kb on + strandat 1687.975 kb on + strandat 1687.976 kb on - strandat 1687.976 kb on - strandat 1687.976 kb on - strandat 1687.976 kb on - strandat 1687.984 kb on + strandat 1687.985 kb on - strandat 1687.985 kb on - strandat 1687.985 kb on - strandat 1687.985 kb on - strandat 1687.985 kb on - strandat 1687.985 kb on - strandat 1687.986 kb on + strandat 1687.986 kb on + strandat 1687.986 kb on + strandat 1687.986 kb on + strandat 1687.987 kb on - strandat 1687.987 kb on - strandat 1688.121 kb on + strandat 1688.122 kb on - strandat 1688.122 kb on - strandat 1688.184 kb on + strandat 1688.349 kb on + strand, within PfGW456L13_1535at 1688.349 kb on + strand, within PfGW456L13_1535at 1688.349 kb on + strand, within PfGW456L13_1535at 1688.349 kb on + strand, within PfGW456L13_1535at 1688.349 kb on + strand, within PfGW456L13_1535at 1688.350 kb on - strand, within PfGW456L13_1535at 1688.350 kb on - strand, within PfGW456L13_1535at 1688.350 kb on - strand, within PfGW456L13_1535at 1688.350 kb on - strand, within PfGW456L13_1535at 1688.350 kb on - strand, within PfGW456L13_1535at 1688.400 kb on + strand, within PfGW456L13_1535at 1688.400 kb on + strand, within PfGW456L13_1535at 1688.400 kb on + strand, within PfGW456L13_1535at 1688.532 kb on + strand, within PfGW456L13_1535at 1688.532 kb on + strand, within PfGW456L13_1535at 1688.532 kb on + strand, within PfGW456L13_1535at 1688.532 kb on + strand, within PfGW456L13_1535at 1688.533 kb on - strand, within PfGW456L13_1535at 1688.533 kb on - strand, within PfGW456L13_1535at 1688.533 kb on - strand, within PfGW456L13_1535at 1688.575 kb on - strand, within PfGW456L13_1535at 1688.575 kb on - strand, within PfGW456L13_1535at 1688.660 kb on + strand, within PfGW456L13_1535at 1688.666 kb on + strand, within PfGW456L13_1535at 1688.667 kb on - strand, within PfGW456L13_1535at 1688.667 kb on - strand, within PfGW456L13_1535at 1688.691 kb on + strand, within PfGW456L13_1535at 1688.692 kb on - strand, within PfGW456L13_1535at 1688.763 kb on + strand, within PfGW456L13_1535at 1688.790 kb on + strand, within PfGW456L13_1535at 1688.790 kb on + strand, within PfGW456L13_1535at 1688.791 kb on - strand, within PfGW456L13_1535at 1688.791 kb on - strand, within PfGW456L13_1535at 1688.791 kb on - strand, within PfGW456L13_1535at 1688.791 kb on - strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.940 kb on + strand, within PfGW456L13_1535at 1688.941 kb on - strand, within PfGW456L13_1535at 1688.941 kb on - strand, within PfGW456L13_1535at 1688.941 kb on - strand, within PfGW456L13_1535at 1688.941 kb on - strand, within PfGW456L13_1535at 1688.954 kb on + strand, within PfGW456L13_1535at 1689.415 kb on - strand, within PfGW456L13_1535at 1689.415 kb on - strand, within PfGW456L13_1535at 1689.444 kb on + strand, within PfGW456L13_1535at 1689.444 kb on + strand, within PfGW456L13_1535at 1689.445 kb on - strand, within PfGW456L13_1535at 1689.522 kb on + strand, within PfGW456L13_1535at 1689.522 kb on + strand, within PfGW456L13_1535at 1689.522 kb on + strand, within PfGW456L13_1535at 1689.523 kb on - strand, within PfGW456L13_1535at 1689.523 kb on - strand, within PfGW456L13_1535at 1689.523 kb on - strand, within PfGW456L13_1535at 1689.542 kb on + strand, within PfGW456L13_1535at 1689.555 kb on + strand, within PfGW456L13_1535at 1689.555 kb on + strand, within PfGW456L13_1535at 1689.556 kb on - strand, within PfGW456L13_1535at 1689.576 kb on + strand, within PfGW456L13_1535at 1689.576 kb on + strand, within PfGW456L13_1535at 1689.576 kb on + strand, within PfGW456L13_1535at 1689.577 kb on - strand, within PfGW456L13_1535at 1689.577 kb on - strand, within PfGW456L13_1535at 1689.577 kb on - strand, within PfGW456L13_1535at 1689.577 kb on - strand, within PfGW456L13_1535at 1689.625 kb on + strand, within PfGW456L13_1535at 1689.625 kb on + strand, within PfGW456L13_1535at 1689.626 kb on - strand, within PfGW456L13_1535at 1689.626 kb on - strand, within PfGW456L13_1535at 1689.729 kb on + strand, within PfGW456L13_1535at 1689.729 kb on + strand, within PfGW456L13_1535at 1689.729 kb on + strand, within PfGW456L13_1535at 1689.729 kb on + strand, within PfGW456L13_1535at 1689.729 kb on + strand, within PfGW456L13_1535at 1689.729 kb on + strand, within PfGW456L13_1535at 1689.729 kb on + strand, within PfGW456L13_1535at 1689.730 kb on - strand, within PfGW456L13_1535at 1689.859 kb on - strand, within PfGW456L13_1535at 1689.916 kb on - strand, within PfGW456L13_1535at 1690.097 kb on + strandat 1690.221 kb on + strandat 1690.221 kb on + strandat 1690.221 kb on + strandat 1690.221 kb on + strandat 1690.221 kb on + strandat 1690.221 kb on + strandat 1690.222 kb on - strandat 1690.222 kb on - strandat 1690.222 kb on - strandat 1690.222 kb on - strandat 1690.223 kb on + strandat 1690.224 kb on - strandat 1690.314 kb on + strandat 1690.314 kb on + strandat 1690.315 kb on - strandat 1690.315 kb on - strandat 1690.315 kb on - strandat 1690.367 kb on + strandat 1690.367 kb on + strandat 1690.368 kb on - strandat 1690.368 kb on - strandat 1690.389 kb on + strandat 1690.390 kb on - strandat 1690.394 kb on + strandat 1690.394 kb on + strandat 1690.394 kb on + strandat 1690.394 kb on + strandat 1690.394 kb on + strandat 1690.395 kb on - strandat 1690.395 kb on - strandat 1690.395 kb on - strandat 1690.395 kb on - strandat 1690.678 kb on + strand, within PfGW456L13_1536at 1690.678 kb on + strand, within PfGW456L13_1536at 1690.678 kb on + strand, within PfGW456L13_1536at 1690.678 kb on + strand, within PfGW456L13_1536at 1690.678 kb on + strand, within PfGW456L13_1536at 1690.678 kb on + strand, within PfGW456L13_1536at 1690.678 kb on + strand, within PfGW456L13_1536at 1690.678 kb on + strand, within PfGW456L13_1536at 1690.679 kb on - strand, within PfGW456L13_1536at 1690.679 kb on - strand, within PfGW456L13_1536at 1690.679 kb on - strand, within PfGW456L13_1536at 1690.890 kb on - strand, within PfGW456L13_1536at 1691.060 kb on + strandat 1691.060 kb on + strandat 1691.060 kb on + strandat 1691.060 kb on + strandat 1691.060 kb on + strandat 1691.061 kb on - strandat 1691.061 kb on - strandat 1691.061 kb on - strandat 1691.061 kb on - strandat 1691.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,687,145 + PfGW456L13_1534 0.53 -0.6
1,687,146 - PfGW456L13_1534 0.53 +3.0
1,687,146 - PfGW456L13_1534 0.53 -0.3
1,687,146 - PfGW456L13_1534 0.53 -0.5
1,687,236 + PfGW456L13_1534 0.59 +0.7
1,687,573 + PfGW456L13_1534 0.80 -0.6
1,687,574 - PfGW456L13_1534 0.80 -1.2
1,687,574 - PfGW456L13_1534 0.80 -0.2
1,687,574 - PfGW456L13_1534 0.80 -1.0
1,687,574 - PfGW456L13_1534 0.80 +0.9
1,687,574 - PfGW456L13_1534 0.80 -0.4
1,687,574 - PfGW456L13_1534 0.80 -0.6
1,687,574 - PfGW456L13_1534 0.80 +0.7
1,687,574 - PfGW456L13_1534 0.80 -1.2
1,687,574 - PfGW456L13_1534 0.80 -0.3
1,687,574 - PfGW456L13_1534 0.80 -1.0
1,687,574 - PfGW456L13_1534 0.80 -0.3
1,687,577 + PfGW456L13_1534 0.80 -0.1
1,687,577 + PfGW456L13_1534 0.80 -1.1
1,687,577 + PfGW456L13_1534 0.80 +0.5
1,687,577 + PfGW456L13_1534 0.80 -1.3
1,687,577 + PfGW456L13_1534 0.80 -0.8
1,687,578 - PfGW456L13_1534 0.80 -0.7
1,687,578 - PfGW456L13_1534 0.80 -0.6
1,687,578 - PfGW456L13_1534 0.80 +0.1
1,687,578 - PfGW456L13_1534 0.80 +1.2
1,687,650 - PfGW456L13_1534 0.85 +0.2
1,687,761 + +0.1
1,687,761 + +0.9
1,687,762 - +1.1
1,687,762 - -2.1
1,687,762 - -1.2
1,687,762 - -0.6
1,687,762 - +0.1
1,687,762 - +0.8
1,687,762 - +0.3
1,687,763 + +0.3
1,687,763 + -0.9
1,687,763 + -1.1
1,687,763 + +0.2
1,687,763 + +2.2
1,687,764 - -2.4
1,687,764 - -0.0
1,687,764 - -0.4
1,687,764 - +0.3
1,687,764 - +0.9
1,687,770 - +0.5
1,687,797 + +0.2
1,687,797 + +1.7
1,687,797 + -1.5
1,687,798 - +0.7
1,687,798 - +0.2
1,687,921 + -0.2
1,687,921 + -1.6
1,687,975 + +0.2
1,687,976 - -0.8
1,687,976 - -0.2
1,687,976 - +0.5
1,687,976 - +0.7
1,687,984 + +1.2
1,687,985 - +0.1
1,687,985 - -0.8
1,687,985 - -2.0
1,687,985 - +0.9
1,687,985 - +0.2
1,687,985 - -0.0
1,687,986 + +1.7
1,687,986 + -0.6
1,687,986 + +0.6
1,687,986 + +0.4
1,687,987 - -0.8
1,687,987 - -1.8
1,688,121 + +0.3
1,688,122 - +1.0
1,688,122 - -2.0
1,688,184 + -0.6
1,688,349 + PfGW456L13_1535 0.11 -0.5
1,688,349 + PfGW456L13_1535 0.11 -0.1
1,688,349 + PfGW456L13_1535 0.11 +1.9
1,688,349 + PfGW456L13_1535 0.11 -0.4
1,688,349 + PfGW456L13_1535 0.11 -0.7
1,688,350 - PfGW456L13_1535 0.11 -0.2
1,688,350 - PfGW456L13_1535 0.11 -1.6
1,688,350 - PfGW456L13_1535 0.11 -0.3
1,688,350 - PfGW456L13_1535 0.11 -0.3
1,688,350 - PfGW456L13_1535 0.11 -1.7
1,688,400 + PfGW456L13_1535 0.14 -0.4
1,688,400 + PfGW456L13_1535 0.14 -2.3
1,688,400 + PfGW456L13_1535 0.14 -1.5
1,688,532 + PfGW456L13_1535 0.20 -0.8
1,688,532 + PfGW456L13_1535 0.20 -0.8
1,688,532 + PfGW456L13_1535 0.20 -1.3
1,688,532 + PfGW456L13_1535 0.20 -0.3
1,688,533 - PfGW456L13_1535 0.20 +0.5
1,688,533 - PfGW456L13_1535 0.20 -0.9
1,688,533 - PfGW456L13_1535 0.20 +0.1
1,688,575 - PfGW456L13_1535 0.22 -1.5
1,688,575 - PfGW456L13_1535 0.22 +0.3
1,688,660 + PfGW456L13_1535 0.25 -0.7
1,688,666 + PfGW456L13_1535 0.26 -2.4
1,688,667 - PfGW456L13_1535 0.26 +0.8
1,688,667 - PfGW456L13_1535 0.26 +0.5
1,688,691 + PfGW456L13_1535 0.27 -1.1
1,688,692 - PfGW456L13_1535 0.27 -2.0
1,688,763 + PfGW456L13_1535 0.30 -1.0
1,688,790 + PfGW456L13_1535 0.31 -1.3
1,688,790 + PfGW456L13_1535 0.31 -1.2
1,688,791 - PfGW456L13_1535 0.31 +0.3
1,688,791 - PfGW456L13_1535 0.31 -0.3
1,688,791 - PfGW456L13_1535 0.31 -0.7
1,688,791 - PfGW456L13_1535 0.31 +0.5
1,688,940 + PfGW456L13_1535 0.38 +0.8
1,688,940 + PfGW456L13_1535 0.38 +0.4
1,688,940 + PfGW456L13_1535 0.38 -1.7
1,688,940 + PfGW456L13_1535 0.38 -1.1
1,688,940 + PfGW456L13_1535 0.38 -2.2
1,688,940 + PfGW456L13_1535 0.38 +0.4
1,688,940 + PfGW456L13_1535 0.38 -1.0
1,688,940 + PfGW456L13_1535 0.38 -0.2
1,688,940 + PfGW456L13_1535 0.38 -1.0
1,688,940 + PfGW456L13_1535 0.38 +0.5
1,688,940 + PfGW456L13_1535 0.38 -0.7
1,688,940 + PfGW456L13_1535 0.38 -1.1
1,688,940 + PfGW456L13_1535 0.38 -1.6
1,688,940 + PfGW456L13_1535 0.38 -0.5
1,688,940 + PfGW456L13_1535 0.38 -0.2
1,688,941 - PfGW456L13_1535 0.38 -0.1
1,688,941 - PfGW456L13_1535 0.38 -0.5
1,688,941 - PfGW456L13_1535 0.38 -0.1
1,688,941 - PfGW456L13_1535 0.38 -0.6
1,688,954 + PfGW456L13_1535 0.39 +0.7
1,689,415 - PfGW456L13_1535 0.59 -1.9
1,689,415 - PfGW456L13_1535 0.59 -0.1
1,689,444 + PfGW456L13_1535 0.61 +0.3
1,689,444 + PfGW456L13_1535 0.61 -0.7
1,689,445 - PfGW456L13_1535 0.61 -1.2
1,689,522 + PfGW456L13_1535 0.64 -0.3
1,689,522 + PfGW456L13_1535 0.64 -0.1
1,689,522 + PfGW456L13_1535 0.64 +0.1
1,689,523 - PfGW456L13_1535 0.64 -0.6
1,689,523 - PfGW456L13_1535 0.64 +0.4
1,689,523 - PfGW456L13_1535 0.64 -0.2
1,689,542 + PfGW456L13_1535 0.65 +0.5
1,689,555 + PfGW456L13_1535 0.66 -1.1
1,689,555 + PfGW456L13_1535 0.66 -0.3
1,689,556 - PfGW456L13_1535 0.66 -0.9
1,689,576 + PfGW456L13_1535 0.67 -1.1
1,689,576 + PfGW456L13_1535 0.67 -0.1
1,689,576 + PfGW456L13_1535 0.67 -1.3
1,689,577 - PfGW456L13_1535 0.67 +1.1
1,689,577 - PfGW456L13_1535 0.67 +0.1
1,689,577 - PfGW456L13_1535 0.67 -1.0
1,689,577 - PfGW456L13_1535 0.67 -0.3
1,689,625 + PfGW456L13_1535 0.69 -1.1
1,689,625 + PfGW456L13_1535 0.69 -0.5
1,689,626 - PfGW456L13_1535 0.69 -1.3
1,689,626 - PfGW456L13_1535 0.69 +0.1
1,689,729 + PfGW456L13_1535 0.74 -0.9
1,689,729 + PfGW456L13_1535 0.74 -0.9
1,689,729 + PfGW456L13_1535 0.74 -0.3
1,689,729 + PfGW456L13_1535 0.74 -0.8
1,689,729 + PfGW456L13_1535 0.74 +0.2
1,689,729 + PfGW456L13_1535 0.74 -0.8
1,689,729 + PfGW456L13_1535 0.74 -0.3
1,689,730 - PfGW456L13_1535 0.74 -0.5
1,689,859 - PfGW456L13_1535 0.79 +0.1
1,689,916 - PfGW456L13_1535 0.82 +0.2
1,690,097 + +0.3
1,690,221 + -0.5
1,690,221 + -0.5
1,690,221 + +0.1
1,690,221 + -0.0
1,690,221 + +0.7
1,690,221 + -0.3
1,690,222 - -1.0
1,690,222 - -0.1
1,690,222 - -0.3
1,690,222 - -1.9
1,690,223 + -0.7
1,690,224 - -1.7
1,690,314 + -0.1
1,690,314 + -1.0
1,690,315 - +0.5
1,690,315 - +0.9
1,690,315 - +0.4
1,690,367 + -0.2
1,690,367 + +0.6
1,690,368 - +0.6
1,690,368 - +0.7
1,690,389 + +0.2
1,690,390 - -0.1
1,690,394 + +0.5
1,690,394 + -0.8
1,690,394 + -0.0
1,690,394 + -0.7
1,690,394 + -0.3
1,690,395 - +2.3
1,690,395 - -1.8
1,690,395 - +0.5
1,690,395 - +0.7
1,690,678 + PfGW456L13_1536 0.47 -0.8
1,690,678 + PfGW456L13_1536 0.47 +0.1
1,690,678 + PfGW456L13_1536 0.47 +0.7
1,690,678 + PfGW456L13_1536 0.47 -1.5
1,690,678 + PfGW456L13_1536 0.47 -1.6
1,690,678 + PfGW456L13_1536 0.47 +0.5
1,690,678 + PfGW456L13_1536 0.47 +0.7
1,690,678 + PfGW456L13_1536 0.47 +0.5
1,690,679 - PfGW456L13_1536 0.47 -1.0
1,690,679 - PfGW456L13_1536 0.47 +0.6
1,690,679 - PfGW456L13_1536 0.47 +1.3
1,690,890 - PfGW456L13_1536 0.75 -0.2
1,691,060 + +0.9
1,691,060 + +0.0
1,691,060 + -0.3
1,691,060 + -0.2
1,691,060 + +0.1
1,691,061 - +0.1
1,691,061 - +0.4
1,691,061 - -1.1
1,691,061 - +0.9
1,691,061 - +0.3

Or see this region's nucleotide sequence