Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2490 and PP_5529 are separated by 69 nucleotides PP_5529 and PP_2491 are separated by 9 nucleotides PP_2491 and PP_2492 are separated by 82 nucleotides
PP_2490: PP_2490 - Flavoprotein, at 2,838,698 to 2,839,522
_2490
PP_5529: PP_5529 - putative epimerase, at 2,839,592 to 2,839,894
_5529
PP_2491: PP_2491 - ThiJ/PfpI family protein, at 2,839,904 to 2,840,581
_2491
PP_2492: PP_2492 - alcohol dehydrogenase, NAD(P)-dependent, at 2,840,664 to 2,841,821
_2492
Position (kb)
2839
2840 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2838.646 kb on - strand at 2838.646 kb on - strand at 2838.646 kb on - strand at 2838.648 kb on + strand at 2838.649 kb on - strand at 2838.676 kb on - strand at 2838.676 kb on - strand at 2838.694 kb on + strand at 2838.716 kb on + strand at 2838.716 kb on + strand at 2838.716 kb on + strand at 2838.717 kb on - strand at 2838.725 kb on + strand at 2838.726 kb on - strand at 2838.726 kb on - strand at 2838.726 kb on - strand at 2838.773 kb on + strand at 2838.773 kb on + strand at 2838.774 kb on - strand at 2838.891 kb on + strand, within PP_2490 at 2838.891 kb on + strand, within PP_2490 at 2838.892 kb on - strand, within PP_2490 at 2838.983 kb on + strand, within PP_2490 at 2838.984 kb on - strand, within PP_2490 at 2839.121 kb on + strand, within PP_2490 at 2839.121 kb on + strand, within PP_2490 at 2839.121 kb on + strand, within PP_2490 at 2839.121 kb on + strand, within PP_2490 at 2839.137 kb on + strand, within PP_2490 at 2839.138 kb on - strand, within PP_2490 at 2839.149 kb on + strand, within PP_2490 at 2839.412 kb on + strand, within PP_2490 at 2839.413 kb on - strand, within PP_2490 at 2839.460 kb on + strand at 2839.460 kb on + strand at 2839.461 kb on - strand at 2839.461 kb on - strand at 2839.465 kb on + strand at 2839.465 kb on + strand at 2839.465 kb on + strand at 2839.465 kb on + strand at 2839.465 kb on + strand at 2839.465 kb on + strand at 2839.466 kb on - strand at 2839.562 kb on + strand at 2839.563 kb on - strand at 2839.564 kb on + strand at 2839.564 kb on + strand at 2839.564 kb on + strand at 2839.564 kb on + strand at 2839.564 kb on + strand at 2839.564 kb on + strand at 2839.564 kb on + strand at 2839.565 kb on - strand at 2839.565 kb on - strand at 2839.565 kb on - strand at 2839.565 kb on - strand at 2839.565 kb on - strand at 2839.565 kb on - strand at 2839.565 kb on - strand at 2839.597 kb on + strand at 2839.597 kb on + strand at 2839.597 kb on + strand at 2839.661 kb on + strand, within PP_5529 at 2839.689 kb on + strand, within PP_5529 at 2839.711 kb on + strand, within PP_5529 at 2839.725 kb on - strand, within PP_5529 at 2839.725 kb on - strand, within PP_5529 at 2839.725 kb on - strand, within PP_5529 at 2839.776 kb on + strand, within PP_5529 at 2839.834 kb on - strand, within PP_5529 at 2839.834 kb on - strand, within PP_5529 at 2839.905 kb on + strand at 2839.905 kb on + strand at 2839.906 kb on - strand at 2839.994 kb on + strand, within PP_2491 at 2839.994 kb on + strand, within PP_2491 at 2839.994 kb on + strand, within PP_2491 at 2839.994 kb on + strand, within PP_2491 at 2839.994 kb on + strand, within PP_2491 at 2839.994 kb on + strand, within PP_2491 at 2839.995 kb on - strand, within PP_2491 at 2839.995 kb on - strand, within PP_2491 at 2839.995 kb on - strand, within PP_2491 at 2839.995 kb on - strand, within PP_2491 at 2839.995 kb on - strand, within PP_2491 at 2839.995 kb on - strand, within PP_2491 at 2840.081 kb on + strand, within PP_2491 at 2840.081 kb on + strand, within PP_2491 at 2840.082 kb on - strand, within PP_2491 at 2840.487 kb on + strand, within PP_2491 at 2840.491 kb on - strand, within PP_2491 at 2840.491 kb on - strand, within PP_2491 at 2840.600 kb on - strand at 2840.605 kb on + strand at 2840.609 kb on + strand at 2840.609 kb on + strand at 2840.609 kb on + strand at 2840.610 kb on - strand at 2840.623 kb on + strand at 2840.624 kb on - strand at 2840.700 kb on + strand at 2840.701 kb on - strand at 2840.701 kb on - strand at 2840.701 kb on - strand at 2840.734 kb on - strand at 2840.847 kb on + strand, within PP_2492 at 2840.848 kb on - strand, within PP_2492 at 2840.848 kb on - strand, within PP_2492 at 2840.886 kb on + strand, within PP_2492 at 2840.887 kb on - strand, within PP_2492 at 2840.887 kb on - strand, within PP_2492 at 2840.887 kb on - strand, within PP_2492 at 2840.887 kb on - strand, within PP_2492 at 2840.888 kb on + strand, within PP_2492 at 2840.889 kb on - strand, within PP_2492 at 2840.889 kb on - strand at 2840.889 kb on - strand, within PP_2492
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 2,838,646 - -0.0 2,838,646 - +0.4 2,838,646 - +0.9 2,838,648 + +0.4 2,838,649 - +0.5 2,838,676 - +0.7 2,838,676 - -0.1 2,838,694 + +0.5 2,838,716 + -0.3 2,838,716 + -1.1 2,838,716 + -0.2 2,838,717 - +0.6 2,838,725 + +1.5 2,838,726 - +0.0 2,838,726 - +0.8 2,838,726 - +1.0 2,838,773 + -1.2 2,838,773 + +0.9 2,838,774 - -1.0 2,838,891 + PP_2490 0.23 +0.0 2,838,891 + PP_2490 0.23 +1.1 2,838,892 - PP_2490 0.24 -0.1 2,838,983 + PP_2490 0.35 +1.0 2,838,984 - PP_2490 0.35 -1.0 2,839,121 + PP_2490 0.51 +0.1 2,839,121 + PP_2490 0.51 +0.5 2,839,121 + PP_2490 0.51 -1.6 2,839,121 + PP_2490 0.51 +0.5 2,839,137 + PP_2490 0.53 +0.8 2,839,138 - PP_2490 0.53 -0.5 2,839,149 + PP_2490 0.55 -2.2 2,839,412 + PP_2490 0.87 -1.2 2,839,413 - PP_2490 0.87 -0.4 2,839,460 + -0.3 2,839,460 + +2.2 2,839,461 - +0.6 2,839,461 - -0.3 2,839,465 + -3.3 2,839,465 + -0.1 2,839,465 + +3.1 2,839,465 + -0.7 2,839,465 + +1.0 2,839,465 + +0.3 2,839,466 - -1.7 2,839,562 + +0.9 2,839,563 - -0.5 2,839,564 + +0.0 2,839,564 + +0.8 2,839,564 + +0.5 2,839,564 + +0.7 2,839,564 + +0.4 2,839,564 + -0.8 2,839,564 + +0.5 2,839,565 - -0.1 2,839,565 - +0.6 2,839,565 - +1.4 2,839,565 - -0.4 2,839,565 - -1.0 2,839,565 - -0.7 2,839,565 - -0.4 2,839,597 + -0.9 2,839,597 + +1.1 2,839,597 + -0.5 2,839,661 + PP_5529 0.23 +0.5 2,839,689 + PP_5529 0.32 -2.1 2,839,711 + PP_5529 0.39 -2.8 2,839,725 - PP_5529 0.44 -1.7 2,839,725 - PP_5529 0.44 +0.2 2,839,725 - PP_5529 0.44 +0.5 2,839,776 + PP_5529 0.61 -0.0 2,839,834 - PP_5529 0.80 -1.4 2,839,834 - PP_5529 0.80 -0.7 2,839,905 + +0.9 2,839,905 + -0.8 2,839,906 - +0.4 2,839,994 + PP_2491 0.13 -0.7 2,839,994 + PP_2491 0.13 +0.2 2,839,994 + PP_2491 0.13 +0.3 2,839,994 + PP_2491 0.13 +0.2 2,839,994 + PP_2491 0.13 +0.3 2,839,994 + PP_2491 0.13 -1.2 2,839,995 - PP_2491 0.13 -0.7 2,839,995 - PP_2491 0.13 +0.8 2,839,995 - PP_2491 0.13 +0.4 2,839,995 - PP_2491 0.13 -0.5 2,839,995 - PP_2491 0.13 -0.9 2,839,995 - PP_2491 0.13 +0.1 2,840,081 + PP_2491 0.26 +1.5 2,840,081 + PP_2491 0.26 -1.1 2,840,082 - PP_2491 0.26 -1.2 2,840,487 + PP_2491 0.86 -0.2 2,840,491 - PP_2491 0.87 +0.0 2,840,491 - PP_2491 0.87 -0.2 2,840,600 - -0.5 2,840,605 + -0.2 2,840,609 + +0.9 2,840,609 + +0.6 2,840,609 + +0.9 2,840,610 - +0.3 2,840,623 + -1.2 2,840,624 - -2.4 2,840,700 + -1.3 2,840,701 - +0.1 2,840,701 - -0.8 2,840,701 - +0.5 2,840,734 - -0.2 2,840,847 + PP_2492 0.16 +0.7 2,840,848 - PP_2492 0.16 -0.5 2,840,848 - PP_2492 0.16 +0.5 2,840,886 + PP_2492 0.19 -0.1 2,840,887 - PP_2492 0.19 +0.7 2,840,887 - PP_2492 0.19 -0.2 2,840,887 - PP_2492 0.19 -1.6 2,840,887 - PP_2492 0.19 -0.4 2,840,888 + PP_2492 0.19 +0.1 2,840,889 - PP_2492 0.19 -0.7 2,840,889 - -0.1 2,840,889 - PP_2492 0.19 -0.8
Or see this region's nucleotide sequence