Strain Fitness in Pseudomonas putida KT2440 around PP_5529

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,838,646	-				-0.0
2,838,646	-				+0.4
2,838,646	-				+0.9
2,838,648	+				+0.4
2,838,649	-				+0.5
2,838,676	-				+0.7
2,838,676	-				-0.1
2,838,694	+				+0.5
2,838,716	+				-0.3
2,838,716	+				-1.1
2,838,716	+				-0.2
2,838,717	-				+0.6
2,838,725	+				+1.5
2,838,726	-				+0.0
2,838,726	-				+0.8
2,838,726	-				+1.0
2,838,773	+				-1.2
2,838,773	+				+0.9
2,838,774	-				-1.0
2,838,891	+		PP_2490	0.23	+0.0
2,838,891	+		PP_2490	0.23	+1.1
2,838,892	-		PP_2490	0.24	-0.1
2,838,983	+		PP_2490	0.35	+1.0
2,838,984	-		PP_2490	0.35	-1.0
2,839,121	+		PP_2490	0.51	+0.1
2,839,121	+		PP_2490	0.51	+0.5
2,839,121	+		PP_2490	0.51	-1.6
2,839,121	+		PP_2490	0.51	+0.5
2,839,137	+		PP_2490	0.53	+0.8
2,839,138	-		PP_2490	0.53	-0.5
2,839,149	+		PP_2490	0.55	-2.2
2,839,412	+		PP_2490	0.87	-1.2
2,839,413	-		PP_2490	0.87	-0.4
2,839,460	+				-0.3
2,839,460	+				+2.2
2,839,461	-				+0.6
2,839,461	-				-0.3
2,839,465	+				-3.3
2,839,465	+				-0.1
2,839,465	+				+3.1
2,839,465	+				-0.7
2,839,465	+				+1.0
2,839,465	+				+0.3
2,839,466	-				-1.7
2,839,562	+				+0.9
2,839,563	-				-0.5
2,839,564	+				+0.0
2,839,564	+				+0.8
2,839,564	+				+0.5
2,839,564	+				+0.7
2,839,564	+				+0.4
2,839,564	+				-0.8
2,839,564	+				+0.5
2,839,565	-				-0.1
2,839,565	-				+0.6
2,839,565	-				+1.4
2,839,565	-				-0.4
2,839,565	-				-1.0
2,839,565	-				-0.7
2,839,565	-				-0.4
2,839,597	+				-0.9
2,839,597	+				+1.1
2,839,597	+				-0.5
2,839,661	+		PP_5529	0.23	+0.5
2,839,689	+		PP_5529	0.32	-2.1
2,839,711	+		PP_5529	0.39	-2.8
2,839,725	-		PP_5529	0.44	-1.7
2,839,725	-		PP_5529	0.44	+0.2
2,839,725	-		PP_5529	0.44	+0.5
2,839,776	+		PP_5529	0.61	-0.0
2,839,834	-		PP_5529	0.80	-1.4
2,839,834	-		PP_5529	0.80	-0.7
2,839,905	+				+0.9
2,839,905	+				-0.8
2,839,906	-				+0.4
2,839,994	+		PP_2491	0.13	-0.7
2,839,994	+		PP_2491	0.13	+0.2
2,839,994	+		PP_2491	0.13	+0.3
2,839,994	+		PP_2491	0.13	+0.2
2,839,994	+		PP_2491	0.13	+0.3
2,839,994	+		PP_2491	0.13	-1.2
2,839,995	-		PP_2491	0.13	-0.7
2,839,995	-		PP_2491	0.13	+0.8
2,839,995	-		PP_2491	0.13	+0.4
2,839,995	-		PP_2491	0.13	-0.5
2,839,995	-		PP_2491	0.13	-0.9
2,839,995	-		PP_2491	0.13	+0.1
2,840,081	+		PP_2491	0.26	+1.5
2,840,081	+		PP_2491	0.26	-1.1
2,840,082	-		PP_2491	0.26	-1.2
2,840,487	+		PP_2491	0.86	-0.2
2,840,491	-		PP_2491	0.87	+0.0
2,840,491	-		PP_2491	0.87	-0.2
2,840,600	-				-0.5
2,840,605	+				-0.2
2,840,609	+				+0.9
2,840,609	+				+0.6
2,840,609	+				+0.9
2,840,610	-				+0.3
2,840,623	+				-1.2
2,840,624	-				-2.4
2,840,700	+				-1.3
2,840,701	-				+0.1
2,840,701	-				-0.8
2,840,701	-				+0.5
2,840,734	-				-0.2
2,840,847	+		PP_2492	0.16	+0.7
2,840,848	-		PP_2492	0.16	-0.5
2,840,848	-		PP_2492	0.16	+0.5
2,840,886	+		PP_2492	0.19	-0.1
2,840,887	-		PP_2492	0.19	+0.7
2,840,887	-		PP_2492	0.19	-0.2
2,840,887	-		PP_2492	0.19	-1.6
2,840,887	-		PP_2492	0.19	-0.4
2,840,888	+		PP_2492	0.19	+0.1
2,840,889	-		PP_2492	0.19	-0.7
2,840,889	-				-0.1
2,840,889	-		PP_2492	0.19	-0.8