Strain Fitness in Pseudomonas putida KT2440 around PP_5517

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,621,856	+				+0.7
2,621,856	+				+0.6
2,621,866	+				-1.0
2,621,867	-				-0.7
2,621,867	-				-1.2
2,621,867	-				+0.3
2,621,896	+				+0.2
2,621,896	+				+0.3
2,621,896	+				+0.3
2,621,896	+				-0.7
2,621,896	+				-1.5
2,621,896	+				+0.1
2,621,897	-				-0.9
2,621,897	-				-2.2
2,621,897	-				+0.2
2,621,898	+				+0.1
2,621,899	-				+0.6
2,621,901	-				-0.3
2,621,901	-				+0.4
2,621,909	+				+0.4
2,621,909	+				+0.2
2,621,911	+				+0.3
2,621,912	-				+0.5
2,621,932	+				+0.5
2,621,932	+				-1.5
2,621,932	+				+0.5
2,621,932	+				-1.0
2,621,932	+				+0.4
2,621,933	-				+0.3
2,621,934	+				-0.0
2,621,934	+				-0.3
2,621,935	-				-0.3
2,621,935	-				+2.1
2,622,035	+		PP_5515	0.28	+0.4
2,622,035	+		PP_5515	0.28	-0.6
2,622,035	+		PP_5515	0.28	-0.4
2,622,036	-		PP_5515	0.28	-0.9
2,622,036	-		PP_5515	0.28	-0.0
2,622,037	+		PP_5515	0.29	+0.4
2,622,037	+		PP_5515	0.29	-0.4
2,622,037	+		PP_5515	0.29	-0.1
2,622,037	+		PP_5515	0.29	-0.5
2,622,038	-		PP_5515	0.29	-0.5
2,622,038	-		PP_5515	0.29	-0.4
2,622,039	+		PP_5515	0.30	+0.9
2,622,039	+		PP_5515	0.30	-1.4
2,622,039	+		PP_5515	0.30	+0.0
2,622,039	+		PP_5515	0.30	-0.9
2,622,039	+		PP_5515	0.30	+0.6
2,622,039	+		PP_5515	0.30	+0.6
2,622,040	-		PP_5515	0.30	+0.5
2,622,040	-		PP_5515	0.30	-0.5
2,622,040	-		PP_5515	0.30	+0.2
2,622,040	-		PP_5515	0.30	+0.7
2,622,040	-		PP_5515	0.30	+0.1
2,622,040	-		PP_5515	0.30	+1.0
2,622,090	+		PP_5515	0.51	+0.1
2,622,091	-		PP_5515	0.51	+1.2
2,622,164	-		PP_5515	0.81	+0.7
2,622,164	-		PP_5515	0.81	-0.0
2,622,383	+				+0.7
2,622,407	+				-0.2
2,622,407	+				-1.0
2,622,407	+				+0.1
2,622,408	-				+0.0
2,622,538	-				-0.7
2,622,538	-				-0.8
2,622,577	+				+0.2
2,622,577	+				-0.5
2,622,613	+		PP_5516	0.22	-0.3
2,622,613	+		PP_5516	0.22	+0.9
2,622,613	+		PP_5516	0.22	-0.2
2,622,614	-		PP_5516	0.22	+0.6
2,622,614	-		PP_5516	0.22	+0.2
2,622,614	-		PP_5516	0.22	+0.8
2,622,622	+		PP_5516	0.25	-0.8
2,622,644	+		PP_5516	0.34	-1.4
2,622,644	+		PP_5516	0.34	+1.5
2,622,644	+		PP_5516	0.34	+0.7
2,622,645	-		PP_5516	0.35	+1.3
2,622,746	+		PP_5516	0.74	-1.2
2,622,747	-		PP_5516	0.75	-0.2
2,622,753	+		PP_5516	0.77	-1.1
2,622,753	+		PP_5516	0.77	-0.6
2,622,754	-		PP_5516	0.77	+1.9
2,622,754	-		PP_5516	0.77	+0.3
2,622,754	-		PP_5516	0.77	+2.1
2,622,856	-				-0.4
2,622,873	-		PP_5517	0.12	+0.5
2,622,917	+		PP_5517	0.26	-1.0
2,622,917	+		PP_5517	0.26	-1.1
2,622,917	+		PP_5517	0.26	-1.1
2,622,922	+		PP_5517	0.27	-1.3
2,622,922	+		PP_5517	0.27	-0.7
2,622,922	+		PP_5517	0.27	-0.6
2,622,946	+		PP_5517	0.34	-1.0
2,622,952	+		PP_5517	0.36	-0.1
2,622,952	+		PP_5517	0.36	-0.6
2,622,953	-		PP_5517	0.36	+1.0
2,622,953	-		PP_5517	0.36	-1.1
2,623,132	+				-0.1
2,623,132	+				+0.2
2,623,132	+				+0.3
2,623,133	-				-2.8
2,623,133	-				+0.6
2,623,139	-				-0.3
2,623,223	-				+0.6
2,623,223	-				+1.2
2,623,223	-				+1.5
2,623,223	-				+0.3
2,623,252	-				+0.3
2,623,252	-				+0.3
2,623,271	+				+0.2
2,623,271	+				-0.8
2,623,272	-				+0.7
2,623,394	+				+0.1
2,623,395	-				-0.5
2,623,413	+				-0.9
2,623,419	+				+0.4
2,623,419	+				-0.9
2,623,419	+				-0.0
2,623,419	+				+0.2
2,623,420	-				-0.3
2,623,420	-				-0.1
2,623,420	-				-1.0
2,623,440	+				+0.3
2,623,486	-		PP_2295	0.13	+0.3
2,623,525	-		PP_2295	0.20	+0.3
2,623,545	+		PP_2295	0.23	+0.1
2,623,550	+		PP_2295	0.24	+0.3
2,623,551	-		PP_2295	0.24	-0.7
2,623,551	-		PP_2295	0.24	+0.1
2,623,562	+		PP_2295	0.26	-0.0
2,623,563	-		PP_2295	0.26	-0.1
2,623,708	+		PP_2295	0.51	+0.6
2,623,708	+		PP_2295	0.51	-1.4
2,623,708	+		PP_2295	0.51	-0.4
2,623,708	+		PP_2295	0.51	-0.4
2,623,709	-		PP_2295	0.51	-0.6
2,623,709	-		PP_2295	0.51	+0.4
2,623,776	+		PP_2295	0.63	-0.9
2,623,777	-		PP_2295	0.63	-0.3
2,623,777	-		PP_2295	0.63	-1.0
2,623,830	+		PP_2295	0.72	+1.9
2,623,905	-		PP_2295	0.85	+0.6
2,623,959	+				+0.1
2,623,972	-				+0.9
2,623,982	+				-1.1
2,623,982	+				-0.2
2,623,983	-				+1.0
2,623,983	-				+1.6
2,623,983	-				+0.3
2,624,041	-				-1.0
2,624,121	+				+0.4
2,624,122	-				+0.0