Strain Fitness in Pseudomonas putida KT2440 around PP_5507

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,588,766	+		PP_2266	0.83	-1.3
2,588,766	+		PP_2266	0.83	+0.4
2,588,766	+		PP_2266	0.83	+0.5
2,588,767	-		PP_2266	0.83	-0.4
2,588,779	+		PP_2266	0.84	+0.9
2,588,897	+		PP_2266	0.88	+0.7
2,588,898	-		PP_2266	0.88	+0.7
2,588,898	-		PP_2266	0.88	-1.6
2,589,048	+				-0.2
2,589,167	-				+3.1
2,589,215	-				-0.5
2,589,449	+				+0.8
2,589,449	+				+0.6
2,589,449	+				+0.4
2,589,450	-				+0.3
2,589,450	-				+0.0
2,589,504	+				-0.2
2,589,505	-				-0.7
2,589,522	-				+0.2
2,589,522	-				-0.6
2,589,605	-				+0.3
2,589,605	-				+0.6
2,589,605	-				+0.5
2,589,605	-				+0.1
2,589,659	-				-0.2
2,589,702	-		PP_5507	0.24	-0.5
2,589,765	+		PP_5507	0.49	-2.1
2,589,766	-		PP_5507	0.49	-0.0
2,589,766	-		PP_5507	0.49	+0.9
2,589,766	-		PP_5507	0.49	-1.4
2,589,821	+		PP_5507	0.71	-1.7
2,589,821	+		PP_5507	0.71	-2.1
2,589,822	-		PP_5507	0.71	-0.6
2,589,926	+				-0.8
2,589,927	+				+0.6
2,589,928	-				+0.4
2,589,949	+				-0.9
2,589,950	-				+0.9
2,590,041	+		PP_2267	0.13	-0.2
2,590,041	+		PP_2267	0.13	-0.1
2,590,041	+		PP_2267	0.13	+0.4
2,590,041	+		PP_2267	0.13	-0.1
2,590,042	-		PP_2267	0.13	+0.5
2,590,184	-		PP_2267	0.34	-1.0
2,590,184	-		PP_2267	0.34	-1.1
2,590,407	+		PP_2267	0.67	-0.1
2,590,408	-		PP_2267	0.67	-0.0
2,590,408	-		PP_2267	0.67	-0.4
2,590,408	-		PP_2267	0.67	+0.4
2,590,618	-				+0.5
2,590,669	+				+0.9
2,590,759	+		PP_2268	0.24	+1.3