Strain Fitness in Pseudomonas putida KT2440 around PP_5218

Experiment: 3-methyl-1-butanol 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5217 and PP_5218 are separated by 273 nucleotidesPP_5218 and PP_5219 overlap by 168 nucleotides PP_5217: PP_5217 - Polyphosphate kinase, at 5,950,773 to 5,952,956 _5217 PP_5218: PP_5218 - DedA family protein, at 5,953,230 to 5,953,874 _5218 PP_5219: PP_5219 - conserved membrane protein of unknown function, at 5,953,707 to 5,955,002 _5219 Position (kb) 5953 5954Strain fitness (log2 ratio) -2 -1 0 1at 5952.244 kb on + strand, within PP_5217at 5952.245 kb on - strand, within PP_5217at 5952.284 kb on + strand, within PP_5217at 5952.285 kb on - strand, within PP_5217at 5952.431 kb on + strand, within PP_5217at 5952.461 kb on - strand, within PP_5217at 5952.461 kb on - strand, within PP_5217at 5952.468 kb on + strand, within PP_5217at 5952.469 kb on - strand, within PP_5217at 5952.496 kb on + strand, within PP_5217at 5952.566 kb on - strand, within PP_5217at 5952.602 kb on + strand, within PP_5217at 5952.757 kb on + strandat 5952.757 kb on + strandat 5952.757 kb on + strandat 5952.757 kb on + strandat 5952.757 kb on + strandat 5952.758 kb on - strandat 5952.758 kb on - strandat 5952.826 kb on + strandat 5952.826 kb on + strandat 5952.827 kb on - strandat 5952.827 kb on - strandat 5952.827 kb on - strandat 5952.999 kb on + strandat 5953.010 kb on + strandat 5953.010 kb on + strandat 5953.010 kb on + strandat 5953.011 kb on - strandat 5953.011 kb on - strandat 5953.011 kb on - strandat 5953.036 kb on + strandat 5953.051 kb on + strandat 5953.051 kb on + strandat 5953.051 kb on + strandat 5953.052 kb on - strandat 5953.066 kb on + strandat 5953.067 kb on - strandat 5953.067 kb on - strandat 5953.092 kb on - strandat 5953.404 kb on + strand, within PP_5218at 5953.404 kb on + strand, within PP_5218at 5953.405 kb on - strand, within PP_5218at 5953.506 kb on - strand, within PP_5218at 5953.534 kb on - strand, within PP_5218at 5953.534 kb on - strand, within PP_5218at 5953.534 kb on - strand, within PP_5218at 5953.594 kb on - strand, within PP_5218at 5953.594 kb on - strand, within PP_5218at 5953.594 kb on - strand, within PP_5218at 5953.610 kb on + strand, within PP_5218at 5953.611 kb on - strand, within PP_5218at 5953.708 kb on + strandat 5953.708 kb on + strandat 5953.708 kb on + strandat 5953.708 kb on + strandat 5953.709 kb on - strandat 5953.709 kb on - strandat 5953.709 kb on - strandat 5953.770 kb on - strandat 5953.832 kb on - strandat 5953.832 kb on - strandat 5953.894 kb on + strand, within PP_5219at 5953.894 kb on + strand, within PP_5219at 5953.894 kb on + strand, within PP_5219at 5953.895 kb on - strand, within PP_5219at 5954.053 kb on + strand, within PP_5219at 5954.053 kb on + strand, within PP_5219at 5954.053 kb on + strand, within PP_5219at 5954.053 kb on + strand, within PP_5219at 5954.071 kb on + strand, within PP_5219at 5954.072 kb on - strand, within PP_5219at 5954.072 kb on - strand, within PP_5219at 5954.072 kb on - strand, within PP_5219at 5954.072 kb on - strand, within PP_5219at 5954.095 kb on + strand, within PP_5219at 5954.095 kb on + strand, within PP_5219at 5954.095 kb on + strand, within PP_5219at 5954.095 kb on + strand, within PP_5219at 5954.095 kb on + strand, within PP_5219at 5954.096 kb on - strand, within PP_5219at 5954.096 kb on - strand, within PP_5219at 5954.167 kb on + strand, within PP_5219at 5954.168 kb on - strand, within PP_5219at 5954.216 kb on + strand, within PP_5219at 5954.216 kb on + strand, within PP_5219at 5954.217 kb on - strand, within PP_5219at 5954.217 kb on - strand, within PP_5219at 5954.272 kb on + strand, within PP_5219at 5954.273 kb on - strand, within PP_5219at 5954.273 kb on - strand, within PP_5219at 5954.292 kb on + strand, within PP_5219at 5954.404 kb on + strand, within PP_5219at 5954.405 kb on - strand, within PP_5219at 5954.405 kb on - strand, within PP_5219at 5954.405 kb on - strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.419 kb on + strand, within PP_5219at 5954.420 kb on - strand, within PP_5219at 5954.420 kb on - strand, within PP_5219at 5954.498 kb on + strand, within PP_5219at 5954.499 kb on - strand, within PP_5219at 5954.524 kb on + strand, within PP_5219at 5954.593 kb on + strand, within PP_5219at 5954.594 kb on - strand, within PP_5219at 5954.653 kb on + strand, within PP_5219at 5954.653 kb on + strand, within PP_5219at 5954.653 kb on + strand, within PP_5219at 5954.654 kb on - strand, within PP_5219at 5954.654 kb on - strand, within PP_5219at 5954.728 kb on + strand, within PP_5219at 5954.728 kb on + strand, within PP_5219at 5954.729 kb on - strand, within PP_5219at 5954.729 kb on - strand, within PP_5219at 5954.729 kb on - strand, within PP_5219at 5954.731 kb on + strand, within PP_5219at 5954.731 kb on + strand, within PP_5219at 5954.731 kb on + strand, within PP_5219at 5954.732 kb on - strand, within PP_5219at 5954.732 kb on - strand, within PP_5219at 5954.744 kb on - strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.824 kb on + strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219at 5954.825 kb on - strand, within PP_5219

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol%
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5,952,244 + PP_5217 0.67 +1.0
5,952,245 - PP_5217 0.67 -0.9
5,952,284 + PP_5217 0.69 -0.4
5,952,285 - PP_5217 0.69 -0.5
5,952,431 + PP_5217 0.76 -1.3
5,952,461 - PP_5217 0.77 -0.4
5,952,461 - PP_5217 0.77 -0.8
5,952,468 + PP_5217 0.78 +0.1
5,952,469 - PP_5217 0.78 -0.6
5,952,496 + PP_5217 0.79 +0.8
5,952,566 - PP_5217 0.82 -1.5
5,952,602 + PP_5217 0.84 -0.8
5,952,757 + -0.4
5,952,757 + -1.2
5,952,757 + -0.3
5,952,757 + -0.4
5,952,757 + -0.9
5,952,758 - -1.7
5,952,758 - -2.2
5,952,826 + -1.1
5,952,826 + -0.4
5,952,827 - -1.0
5,952,827 - -1.1
5,952,827 - -0.2
5,952,999 + +0.1
5,953,010 + -1.5
5,953,010 + -0.5
5,953,010 + +0.1
5,953,011 - -1.1
5,953,011 - -1.4
5,953,011 - +0.1
5,953,036 + -1.0
5,953,051 + -0.7
5,953,051 + -0.1
5,953,051 + -0.3
5,953,052 - +0.6
5,953,066 + -0.3
5,953,067 - -1.4
5,953,067 - -1.1
5,953,092 - -0.7
5,953,404 + PP_5218 0.27 -0.2
5,953,404 + PP_5218 0.27 -1.6
5,953,405 - PP_5218 0.27 -0.4
5,953,506 - PP_5218 0.43 -0.9
5,953,534 - PP_5218 0.47 -1.0
5,953,534 - PP_5218 0.47 -1.0
5,953,534 - PP_5218 0.47 -0.7
5,953,594 - PP_5218 0.56 -0.7
5,953,594 - PP_5218 0.56 -0.0
5,953,594 - PP_5218 0.56 +0.9
5,953,610 + PP_5218 0.59 -1.1
5,953,611 - PP_5218 0.59 -0.8
5,953,708 + -0.8
5,953,708 + -0.3
5,953,708 + -0.6
5,953,708 + -2.0
5,953,709 - -0.4
5,953,709 - +0.9
5,953,709 - +1.2
5,953,770 - +1.7
5,953,832 - -1.1
5,953,832 - -0.3
5,953,894 + PP_5219 0.14 -0.2
5,953,894 + PP_5219 0.14 -0.0
5,953,894 + PP_5219 0.14 +1.5
5,953,895 - PP_5219 0.15 -0.0
5,954,053 + PP_5219 0.27 +0.8
5,954,053 + PP_5219 0.27 -0.2
5,954,053 + PP_5219 0.27 -0.4
5,954,053 + PP_5219 0.27 +0.3
5,954,071 + PP_5219 0.28 +0.2
5,954,072 - PP_5219 0.28 -0.6
5,954,072 - PP_5219 0.28 +0.9
5,954,072 - PP_5219 0.28 -0.5
5,954,072 - PP_5219 0.28 +1.3
5,954,095 + PP_5219 0.30 +0.3
5,954,095 + PP_5219 0.30 +0.5
5,954,095 + PP_5219 0.30 -1.5
5,954,095 + PP_5219 0.30 -0.4
5,954,095 + PP_5219 0.30 +0.1
5,954,096 - PP_5219 0.30 +0.4
5,954,096 - PP_5219 0.30 -0.7
5,954,167 + PP_5219 0.35 -0.6
5,954,168 - PP_5219 0.36 -0.7
5,954,216 + PP_5219 0.39 -0.4
5,954,216 + PP_5219 0.39 -1.1
5,954,217 - PP_5219 0.39 +0.7
5,954,217 - PP_5219 0.39 +0.3
5,954,272 + PP_5219 0.44 +0.2
5,954,273 - PP_5219 0.44 +0.8
5,954,273 - PP_5219 0.44 -1.5
5,954,292 + PP_5219 0.45 +0.0
5,954,404 + PP_5219 0.54 -0.3
5,954,405 - PP_5219 0.54 -0.1
5,954,405 - PP_5219 0.54 -0.8
5,954,405 - PP_5219 0.54 -1.3
5,954,419 + PP_5219 0.55 -0.1
5,954,419 + PP_5219 0.55 -0.1
5,954,419 + PP_5219 0.55 +0.2
5,954,419 + PP_5219 0.55 +0.3
5,954,419 + PP_5219 0.55 -1.3
5,954,420 - PP_5219 0.55 -0.5
5,954,420 - PP_5219 0.55 +0.0
5,954,498 + PP_5219 0.61 -0.9
5,954,499 - PP_5219 0.61 -0.3
5,954,524 + PP_5219 0.63 -0.3
5,954,593 + PP_5219 0.68 -1.2
5,954,594 - PP_5219 0.68 +0.7
5,954,653 + PP_5219 0.73 +0.2
5,954,653 + PP_5219 0.73 +0.3
5,954,653 + PP_5219 0.73 -0.5
5,954,654 - PP_5219 0.73 -0.3
5,954,654 - PP_5219 0.73 +0.5
5,954,728 + PP_5219 0.79 -0.2
5,954,728 + PP_5219 0.79 +1.1
5,954,729 - PP_5219 0.79 -1.5
5,954,729 - PP_5219 0.79 -0.8
5,954,729 - PP_5219 0.79 -0.5
5,954,731 + PP_5219 0.79 -1.3
5,954,731 + PP_5219 0.79 -0.6
5,954,731 + PP_5219 0.79 +1.1
5,954,732 - PP_5219 0.79 +1.3
5,954,732 - PP_5219 0.79 +1.1
5,954,744 - PP_5219 0.80 +0.0
5,954,824 + PP_5219 0.86 -0.5
5,954,824 + PP_5219 0.86 -0.1
5,954,824 + PP_5219 0.86 -0.2
5,954,824 + PP_5219 0.86 -0.7
5,954,824 + PP_5219 0.86 +1.4
5,954,824 + PP_5219 0.86 +0.6
5,954,825 - PP_5219 0.86 +0.3
5,954,825 - PP_5219 0.86 +0.0
5,954,825 - PP_5219 0.86 -0.4
5,954,825 - PP_5219 0.86 +0.3
5,954,825 - PP_5219 0.86 -1.1
5,954,825 - PP_5219 0.86 -0.4
5,954,825 - PP_5219 0.86 +0.6
5,954,825 - PP_5219 0.86 +0.2

Or see this region's nucleotide sequence