Strain Fitness in Pseudomonas putida KT2440 around PP_5161

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
5,885,131	-				+0.5
5,885,131	-				+0.2
5,885,131	-				+0.9
5,885,150	+				+0.0
5,885,150	+				-1.3
5,885,150	+				+0.7
5,885,150	+				-1.3
5,885,150	+				+0.5
5,885,151	-				-0.5
5,885,203	-				+0.3
5,885,203	-				+0.9
5,885,235	+				-0.5
5,885,235	+				-0.2
5,885,235	+				+0.1
5,885,336	+				-1.6
5,885,336	+				-0.1
5,885,336	+				+0.4
5,885,336	+				-1.4
5,885,336	+				+0.1
5,885,336	+				+0.5
5,885,337	-		PP_5160	0.10	+0.8
5,885,337	-		PP_5160	0.10	+0.7
5,885,337	-		PP_5160	0.10	-0.4
5,885,337	-		PP_5160	0.10	-0.1
5,885,337	-		PP_5160	0.10	+0.1
5,885,338	+		PP_5160	0.10	+0.2
5,885,338	+		PP_5160	0.10	-0.8
5,885,339	-		PP_5160	0.10	-0.2
5,885,339	-		PP_5160	0.10	+0.8
5,885,405	+		PP_5160	0.19	-3.0
5,885,433	-				-0.6
5,885,867	+		PP_5160	0.80	-0.1
5,885,867	+		PP_5160	0.80	-0.3
5,885,867	+		PP_5160	0.80	-0.1
5,885,867	+		PP_5160	0.80	-1.3
5,885,867	+		PP_5160	0.80	+0.1
5,885,868	-		PP_5160	0.81	+0.4
5,885,868	-		PP_5160	0.81	-0.4
5,885,873	+		PP_5160	0.81	-0.9
5,885,942	+				-3.2
5,885,942	+				+0.1
5,885,942	+				-0.2
5,885,943	-				-0.0
5,885,967	+				-1.1
5,885,967	+				-1.3
5,885,967	+				-0.5
5,886,046	-				-0.4
5,886,382	-		PP_5161	0.37	-1.3
5,886,585	+		PP_5161	0.57	-1.6
5,886,717	+		PP_5161	0.70	-0.6
5,886,717	+		PP_5161	0.70	+0.1
5,886,718	-		PP_5161	0.70	-0.9
5,886,840	+		PP_5161	0.82	-0.7
5,886,841	-		PP_5161	0.83	-0.1
5,886,945	+				-2.1
5,886,946	-				-0.5
5,886,966	-				+0.8
5,886,966	-				+1.2
5,886,966	-				+0.0
5,887,038	-				+0.2
5,887,038	-				-1.9
5,887,150	+				+0.7
5,887,203	+		PP_5162	0.10	+0.2
5,887,221	-		PP_5162	0.13	+0.5
5,887,242	-		PP_5162	0.17	-1.3
5,887,296	+		PP_5162	0.26	-0.2
5,887,297	-		PP_5162	0.27	-1.2
5,887,297	-		PP_5162	0.27	+0.1
5,887,297	-		PP_5162	0.27	+0.9
5,887,396	+		PP_5162	0.44	+0.8
5,887,424	-		PP_5162	0.49	+0.2
5,887,424	-		PP_5162	0.49	-2.3
5,887,571	+		PP_5162	0.75	+0.9
5,887,571	+		PP_5162	0.75	+0.4
5,887,571	+		PP_5162	0.75	-0.4
5,887,584	-		PP_5162	0.77	+1.0
5,887,675	+				-0.7
5,887,694	+				+0.3
5,887,694	+				-1.4
5,887,695	-				-0.2
5,887,798	-		PP_5163	0.19	+0.9
5,887,928	+		PP_5163	0.41	-0.4
5,887,928	+		PP_5163	0.41	+0.8
5,887,929	-		PP_5163	0.42	+0.2
5,887,929	-		PP_5163	0.42	-0.2
5,887,929	-		PP_5163	0.42	+0.1
5,887,929	-		PP_5163	0.42	-0.8
5,887,929	-				+0.8