Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5041 and PP_5042 are separated by 166 nucleotides PP_5042 and PP_5043 are separated by 98 nucleotides
PP_5041: PP_5041 - glycogen phosphorylase, at 5,743,414 to 5,745,864
_5041
PP_5042: PP_5042 - conserved protein of unknown function, at 5,746,031 to 5,746,453
_5042
PP_5043: PP_5043 - putative PhoPQ-activated pathogenicity-related protein, at 5,746,552 to 5,747,973
_5043
Position (kb) 5746
5747 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5745.209 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.245 kb on - strand, within PP_5041 at 5745.245 kb on - strand, within PP_5041 at 5745.245 kb on - strand, within PP_5041 at 5745.309 kb on - strand, within PP_5041 at 5745.456 kb on + strand, within PP_5041 at 5745.457 kb on - strand, within PP_5041 at 5745.457 kb on - strand, within PP_5041 at 5745.614 kb on + strand, within PP_5041 at 5745.653 kb on + strand at 5745.654 kb on - strand at 5745.791 kb on + strand at 5745.791 kb on + strand at 5745.791 kb on + strand at 5745.791 kb on + strand at 5745.792 kb on - strand at 5745.792 kb on - strand at 5745.792 kb on - strand at 5745.792 kb on - strand at 5745.808 kb on + strand at 5745.809 kb on - strand at 5745.809 kb on - strand at 5745.850 kb on - strand at 5745.913 kb on + strand at 5745.913 kb on + strand at 5745.913 kb on + strand at 5745.914 kb on - strand at 5745.939 kb on + strand at 5745.941 kb on - strand at 5746.043 kb on - strand at 5746.043 kb on - strand at 5746.044 kb on + strand at 5746.044 kb on + strand at 5746.045 kb on - strand at 5746.045 kb on - strand at 5746.045 kb on - strand at 5746.045 kb on - strand at 5746.106 kb on + strand, within PP_5042 at 5746.328 kb on + strand, within PP_5042 at 5746.329 kb on - strand, within PP_5042 at 5746.329 kb on - strand, within PP_5042 at 5746.329 kb on - strand, within PP_5042 at 5746.361 kb on + strand, within PP_5042 at 5746.361 kb on + strand, within PP_5042 at 5746.361 kb on + strand, within PP_5042 at 5746.361 kb on + strand, within PP_5042 at 5746.418 kb on + strand at 5746.471 kb on - strand at 5746.672 kb on + strand at 5746.754 kb on + strand, within PP_5043 at 5746.754 kb on + strand, within PP_5043 at 5746.755 kb on - strand, within PP_5043 at 5746.755 kb on - strand, within PP_5043 at 5746.810 kb on + strand, within PP_5043 at 5746.810 kb on + strand, within PP_5043 at 5746.810 kb on + strand, within PP_5043 at 5746.811 kb on - strand, within PP_5043 at 5746.822 kb on + strand, within PP_5043 at 5746.823 kb on - strand, within PP_5043 at 5746.911 kb on + strand, within PP_5043 at 5747.018 kb on + strand, within PP_5043 at 5747.018 kb on + strand, within PP_5043 at 5747.019 kb on - strand, within PP_5043 at 5747.019 kb on - strand, within PP_5043 at 5747.112 kb on - strand, within PP_5043 at 5747.173 kb on + strand, within PP_5043 at 5747.173 kb on + strand, within PP_5043 at 5747.173 kb on + strand, within PP_5043 at 5747.174 kb on - strand, within PP_5043 at 5747.174 kb on - strand, within PP_5043
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 5,745,209 + PP_5041 0.73 +0.3 5,745,244 + PP_5041 0.75 +0.7 5,745,244 + PP_5041 0.75 +0.0 5,745,244 + PP_5041 0.75 -0.3 5,745,244 + PP_5041 0.75 -0.1 5,745,244 + PP_5041 0.75 -1.6 5,745,245 - PP_5041 0.75 -0.3 5,745,245 - PP_5041 0.75 +0.0 5,745,245 - PP_5041 0.75 -0.8 5,745,309 - PP_5041 0.77 +0.6 5,745,456 + PP_5041 0.83 -0.6 5,745,457 - PP_5041 0.83 -0.9 5,745,457 - PP_5041 0.83 -0.0 5,745,614 + PP_5041 0.90 +0.3 5,745,653 + +0.2 5,745,654 - +0.1 5,745,791 + +0.1 5,745,791 + -0.9 5,745,791 + +0.9 5,745,791 + +1.2 5,745,792 - +0.9 5,745,792 - +0.4 5,745,792 - -0.4 5,745,792 - -0.3 5,745,808 + -0.5 5,745,809 - -0.3 5,745,809 - +0.9 5,745,850 - -0.3 5,745,913 + -0.0 5,745,913 + +2.5 5,745,913 + -0.3 5,745,914 - -0.7 5,745,939 + -0.5 5,745,941 - -0.3 5,746,043 - +0.1 5,746,043 - +0.1 5,746,044 + +0.8 5,746,044 + -0.2 5,746,045 - +0.2 5,746,045 - -0.1 5,746,045 - +0.3 5,746,045 - +0.6 5,746,106 + PP_5042 0.18 -0.1 5,746,328 + PP_5042 0.70 -1.5 5,746,329 - PP_5042 0.70 -0.2 5,746,329 - PP_5042 0.70 +0.5 5,746,329 - PP_5042 0.70 -1.6 5,746,361 + PP_5042 0.78 -2.6 5,746,361 + PP_5042 0.78 -1.6 5,746,361 + PP_5042 0.78 -0.8 5,746,361 + PP_5042 0.78 -0.2 5,746,418 + -0.9 5,746,471 - +1.0 5,746,672 + -0.2 5,746,754 + PP_5043 0.14 +0.2 5,746,754 + PP_5043 0.14 -0.2 5,746,755 - PP_5043 0.14 -0.3 5,746,755 - PP_5043 0.14 -0.9 5,746,810 + PP_5043 0.18 -0.2 5,746,810 + PP_5043 0.18 +1.1 5,746,810 + PP_5043 0.18 +0.2 5,746,811 - PP_5043 0.18 -0.8 5,746,822 + PP_5043 0.19 -0.3 5,746,823 - PP_5043 0.19 +0.4 5,746,911 + PP_5043 0.25 -0.1 5,747,018 + PP_5043 0.33 -0.2 5,747,018 + PP_5043 0.33 -0.8 5,747,019 - PP_5043 0.33 -0.8 5,747,019 - PP_5043 0.33 +0.6 5,747,112 - PP_5043 0.39 +0.4 5,747,173 + PP_5043 0.44 -0.3 5,747,173 + PP_5043 0.44 -0.9 5,747,173 + PP_5043 0.44 +0.7 5,747,174 - PP_5043 0.44 -0.2 5,747,174 - PP_5043 0.44 +0.5
Or see this region's nucleotide sequence