Strain Fitness in Pseudomonas putida KT2440 around PP_4754

Experiment: 3-methyl-1-butanol 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4753 and PP_4754 are separated by 123 nucleotidesPP_4754 and PP_4755 are separated by 129 nucleotides PP_4753: PP_4753 - putative N-methylproline demethylase, at 5,408,839 to 5,410,875 _4753 PP_4754: PP_4754 - Transcriptional regulator, TetR family, at 5,410,999 to 5,411,646 _4754 PP_4755: PP_4755 - Outer membrane ferrichrome-iron receptor, at 5,411,776 to 5,414,169 _4755 Position (kb) 5410 5411 5412Strain fitness (log2 ratio) -2 -1 0 1 2at 5410.368 kb on - strand, within PP_4753at 5410.427 kb on + strand, within PP_4753at 5410.646 kb on + strand, within PP_4753at 5410.647 kb on - strand, within PP_4753at 5410.721 kb on - strandat 5410.721 kb on - strandat 5410.749 kb on - strandat 5410.758 kb on - strandat 5410.913 kb on + strandat 5410.913 kb on + strandat 5410.913 kb on + strandat 5410.913 kb on + strandat 5410.913 kb on + strandat 5410.914 kb on - strandat 5411.059 kb on - strandat 5411.059 kb on - strandat 5411.069 kb on - strand, within PP_4754at 5411.248 kb on + strand, within PP_4754at 5411.249 kb on - strand, within PP_4754at 5411.249 kb on - strand, within PP_4754at 5411.457 kb on + strand, within PP_4754at 5411.476 kb on + strand, within PP_4754at 5411.494 kb on + strand, within PP_4754at 5411.495 kb on - strand, within PP_4754at 5411.539 kb on + strand, within PP_4754at 5411.539 kb on + strand, within PP_4754at 5411.539 kb on + strand, within PP_4754at 5411.539 kb on + strand, within PP_4754at 5411.539 kb on + strand, within PP_4754at 5411.540 kb on - strand, within PP_4754at 5411.540 kb on - strand, within PP_4754at 5411.540 kb on - strand, within PP_4754at 5411.540 kb on - strand, within PP_4754at 5411.561 kb on + strand, within PP_4754at 5411.562 kb on - strand, within PP_4754at 5411.562 kb on - strand, within PP_4754at 5411.562 kb on - strand, within PP_4754at 5411.645 kb on - strandat 5411.680 kb on + strandat 5411.681 kb on - strandat 5411.784 kb on + strandat 5411.784 kb on + strandat 5411.784 kb on + strandat 5411.784 kb on + strandat 5411.785 kb on - strandat 5411.785 kb on - strandat 5411.785 kb on - strandat 5411.786 kb on + strandat 5411.786 kb on + strandat 5411.786 kb on + strandat 5411.786 kb on + strandat 5411.787 kb on - strandat 5411.787 kb on - strandat 5411.787 kb on - strandat 5411.787 kb on - strandat 5411.787 kb on - strandat 5411.822 kb on + strandat 5411.826 kb on - strandat 5411.913 kb on - strandat 5411.959 kb on - strandat 5411.975 kb on + strandat 5411.975 kb on + strandat 5411.976 kb on - strandat 5411.976 kb on - strandat 5411.976 kb on - strandat 5411.976 kb on - strandat 5411.976 kb on - strandat 5411.978 kb on + strandat 5411.978 kb on + strandat 5411.979 kb on - strandat 5411.979 kb on - strandat 5411.990 kb on + strandat 5411.990 kb on + strandat 5411.991 kb on - strandat 5412.028 kb on + strand, within PP_4755at 5412.028 kb on + strand, within PP_4755at 5412.028 kb on + strand, within PP_4755at 5412.029 kb on - strand, within PP_4755at 5412.029 kb on - strand, within PP_4755at 5412.029 kb on - strand, within PP_4755at 5412.035 kb on + strand, within PP_4755at 5412.035 kb on + strand, within PP_4755at 5412.036 kb on - strand, within PP_4755at 5412.036 kb on - strand, within PP_4755at 5412.036 kb on - strand, within PP_4755at 5412.036 kb on - strand, within PP_4755at 5412.036 kb on - strand, within PP_4755at 5412.036 kb on - strand, within PP_4755at 5412.036 kb on - strand, within PP_4755at 5412.038 kb on + strand, within PP_4755at 5412.038 kb on + strand, within PP_4755at 5412.038 kb on + strand, within PP_4755at 5412.039 kb on - strand, within PP_4755at 5412.084 kb on + strand, within PP_4755at 5412.108 kb on - strand, within PP_4755at 5412.140 kb on + strand, within PP_4755at 5412.140 kb on + strand, within PP_4755at 5412.140 kb on + strand, within PP_4755at 5412.140 kb on + strand, within PP_4755at 5412.141 kb on - strand, within PP_4755at 5412.141 kb on - strand, within PP_4755at 5412.141 kb on - strand, within PP_4755at 5412.141 kb on - strand, within PP_4755at 5412.146 kb on + strand, within PP_4755at 5412.147 kb on - strand, within PP_4755at 5412.147 kb on - strand, within PP_4755at 5412.335 kb on + strand, within PP_4755at 5412.335 kb on + strand, within PP_4755at 5412.354 kb on - strand, within PP_4755at 5412.376 kb on - strand, within PP_4755at 5412.420 kb on - strand, within PP_4755at 5412.444 kb on + strand, within PP_4755at 5412.444 kb on + strand, within PP_4755at 5412.444 kb on + strand, within PP_4755at 5412.445 kb on - strand, within PP_4755at 5412.446 kb on + strand, within PP_4755at 5412.446 kb on + strand, within PP_4755at 5412.446 kb on + strand, within PP_4755at 5412.446 kb on + strand, within PP_4755at 5412.446 kb on + strand, within PP_4755at 5412.446 kb on + strand, within PP_4755at 5412.446 kb on + strand, within PP_4755at 5412.447 kb on - strand, within PP_4755at 5412.447 kb on - strand, within PP_4755at 5412.447 kb on - strand, within PP_4755at 5412.447 kb on - strand, within PP_4755at 5412.447 kb on - strand, within PP_4755at 5412.447 kb on - strand, within PP_4755at 5412.447 kb on - strand, within PP_4755at 5412.447 kb on - strand, within PP_4755at 5412.512 kb on + strand, within PP_4755at 5412.512 kb on + strand, within PP_4755at 5412.512 kb on + strand, within PP_4755at 5412.512 kb on + strand, within PP_4755at 5412.513 kb on - strand, within PP_4755at 5412.513 kb on - strand, within PP_4755at 5412.513 kb on - strand, within PP_4755at 5412.513 kb on - strand, within PP_4755at 5412.636 kb on + strandat 5412.638 kb on + strand, within PP_4755at 5412.638 kb on + strand, within PP_4755

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol%
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5,410,368 - PP_4753 0.75 -0.9
5,410,427 + PP_4753 0.78 -0.2
5,410,646 + PP_4753 0.89 +0.5
5,410,647 - PP_4753 0.89 +0.1
5,410,721 - +1.0
5,410,721 - +2.3
5,410,749 - +0.9
5,410,758 - +2.1
5,410,913 + -1.1
5,410,913 + +0.0
5,410,913 + -0.2
5,410,913 + -0.3
5,410,913 + +0.6
5,410,914 - -0.3
5,411,059 - +0.0
5,411,059 - -1.4
5,411,069 - PP_4754 0.11 +0.1
5,411,248 + PP_4754 0.38 -0.8
5,411,249 - PP_4754 0.39 -1.4
5,411,249 - PP_4754 0.39 -0.7
5,411,457 + PP_4754 0.71 -0.7
5,411,476 + PP_4754 0.74 -0.1
5,411,494 + PP_4754 0.76 +0.7
5,411,495 - PP_4754 0.77 +0.1
5,411,539 + PP_4754 0.83 +0.0
5,411,539 + PP_4754 0.83 +0.6
5,411,539 + PP_4754 0.83 -0.0
5,411,539 + PP_4754 0.83 -1.8
5,411,539 + PP_4754 0.83 -1.1
5,411,540 - PP_4754 0.83 +0.1
5,411,540 - PP_4754 0.83 -1.7
5,411,540 - PP_4754 0.83 -1.4
5,411,540 - PP_4754 0.83 -0.2
5,411,561 + PP_4754 0.87 -1.0
5,411,562 - PP_4754 0.87 -1.4
5,411,562 - PP_4754 0.87 -1.8
5,411,562 - PP_4754 0.87 -1.4
5,411,645 - +0.1
5,411,680 + -0.1
5,411,681 - +0.8
5,411,784 + -0.1
5,411,784 + -0.5
5,411,784 + -0.6
5,411,784 + -0.9
5,411,785 - +2.1
5,411,785 - -1.0
5,411,785 - +0.3
5,411,786 + -0.4
5,411,786 + +1.5
5,411,786 + +1.4
5,411,786 + +1.1
5,411,787 - +0.5
5,411,787 - -0.1
5,411,787 - +0.3
5,411,787 - -1.1
5,411,787 - +1.3
5,411,822 + -0.1
5,411,826 - -0.2
5,411,913 - +1.4
5,411,959 - -0.9
5,411,975 + -0.0
5,411,975 + +0.7
5,411,976 - +0.7
5,411,976 - -0.1
5,411,976 - +0.5
5,411,976 - -0.3
5,411,976 - -0.2
5,411,978 + -0.2
5,411,978 + +0.1
5,411,979 - +0.4
5,411,979 - -0.3
5,411,990 + -1.4
5,411,990 + -0.4
5,411,991 - +0.8
5,412,028 + PP_4755 0.11 -2.5
5,412,028 + PP_4755 0.11 +0.7
5,412,028 + PP_4755 0.11 -1.2
5,412,029 - PP_4755 0.11 +0.9
5,412,029 - PP_4755 0.11 +0.5
5,412,029 - PP_4755 0.11 +0.0
5,412,035 + PP_4755 0.11 -0.5
5,412,035 + PP_4755 0.11 -0.2
5,412,036 - PP_4755 0.11 -0.2
5,412,036 - PP_4755 0.11 -0.6
5,412,036 - PP_4755 0.11 +2.0
5,412,036 - PP_4755 0.11 +0.4
5,412,036 - PP_4755 0.11 +0.1
5,412,036 - PP_4755 0.11 -0.4
5,412,036 - PP_4755 0.11 +0.1
5,412,038 + PP_4755 0.11 -1.4
5,412,038 + PP_4755 0.11 +0.9
5,412,038 + PP_4755 0.11 +0.3
5,412,039 - PP_4755 0.11 -0.8
5,412,084 + PP_4755 0.13 -0.1
5,412,108 - PP_4755 0.14 +0.9
5,412,140 + PP_4755 0.15 -0.6
5,412,140 + PP_4755 0.15 +2.2
5,412,140 + PP_4755 0.15 +0.3
5,412,140 + PP_4755 0.15 +1.6
5,412,141 - PP_4755 0.15 +0.2
5,412,141 - PP_4755 0.15 +0.4
5,412,141 - PP_4755 0.15 -1.2
5,412,141 - PP_4755 0.15 +0.1
5,412,146 + PP_4755 0.15 +0.3
5,412,147 - PP_4755 0.15 +0.2
5,412,147 - PP_4755 0.15 -0.6
5,412,335 + PP_4755 0.23 -1.1
5,412,335 + PP_4755 0.23 -0.0
5,412,354 - PP_4755 0.24 -2.3
5,412,376 - PP_4755 0.25 -0.3
5,412,420 - PP_4755 0.27 -1.3
5,412,444 + PP_4755 0.28 +1.4
5,412,444 + PP_4755 0.28 +0.8
5,412,444 + PP_4755 0.28 +0.2
5,412,445 - PP_4755 0.28 -0.0
5,412,446 + PP_4755 0.28 -0.1
5,412,446 + PP_4755 0.28 +0.3
5,412,446 + PP_4755 0.28 -0.1
5,412,446 + PP_4755 0.28 +1.2
5,412,446 + PP_4755 0.28 -0.7
5,412,446 + PP_4755 0.28 +0.9
5,412,446 + PP_4755 0.28 -0.3
5,412,447 - PP_4755 0.28 +1.4
5,412,447 - PP_4755 0.28 +0.1
5,412,447 - PP_4755 0.28 +0.2
5,412,447 - PP_4755 0.28 +0.5
5,412,447 - PP_4755 0.28 -0.5
5,412,447 - PP_4755 0.28 +0.6
5,412,447 - PP_4755 0.28 +0.1
5,412,447 - PP_4755 0.28 -0.5
5,412,512 + PP_4755 0.31 -0.8
5,412,512 + PP_4755 0.31 +0.1
5,412,512 + PP_4755 0.31 -0.4
5,412,512 + PP_4755 0.31 -0.9
5,412,513 - PP_4755 0.31 +0.0
5,412,513 - PP_4755 0.31 +0.5
5,412,513 - PP_4755 0.31 -0.2
5,412,513 - PP_4755 0.31 -1.9
5,412,636 + -0.2
5,412,638 + PP_4755 0.36 -0.2
5,412,638 + PP_4755 0.36 +0.4

Or see this region's nucleotide sequence