Strain Fitness in Pseudomonas putida KT2440 around PP_4682

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
5,319,206	-				+0.2
5,319,274	-				+0.2
5,319,306	+				-0.6
5,319,306	+				+0.7
5,319,306	+				+0.2
5,319,307	-				-1.3
5,319,307	-				+0.9
5,319,307	-				+0.8
5,319,307	-				-0.3
5,319,362	+				+0.5
5,319,363	-				-0.4
5,319,386	+				+0.5
5,319,399	+				-0.5
5,319,422	+				-1.3
5,319,422	+				-0.5
5,319,425	+				+0.0
5,319,425	+				+0.1
5,319,426	-				-0.7
5,319,431	+				+0.6
5,319,432	-				-0.5
5,319,432	-				-0.2
5,319,477	+				+0.1
5,319,478	-				-0.8
5,319,543	+				+0.4
5,319,544	-				+0.2
5,319,607	+				-0.9
5,319,830	+		PP_4681	0.14	+0.4
5,319,979	+		PP_4681	0.59	-0.0
5,320,000	+		PP_4681	0.65	-0.1
5,320,001	-		PP_4681	0.65	-0.6
5,320,091	-				-1.0
5,320,236	-		PP_4682	0.15	-1.0
5,320,310	+		PP_4682	0.24	-2.1
5,320,310	+		PP_4682	0.24	-1.1
5,320,482	+		PP_4682	0.46	-0.4
5,320,626	+		PP_4682	0.64	-1.6
5,320,752	+				+0.1
5,320,752	+		PP_4682	0.80	-2.5
5,320,754	+		PP_4682	0.80	-0.7
5,320,755	-		PP_4682	0.80	-0.7
5,320,755	-		PP_4682	0.80	-0.9
5,320,755	-		PP_4682	0.80	+1.1
5,320,932	-				-0.2
5,320,969	+				-1.0
5,320,970	-				+0.2
5,321,027	+				+1.0
5,321,028	-				-0.1
5,321,028	-				-0.2
5,321,028	-				+0.2
5,321,078	+				+0.3
5,321,078	+				+0.3
5,321,290	-		PP_4683	0.16	-0.2
5,321,333	+		PP_4683	0.17	-1.5
5,321,349	+		PP_4683	0.18	-1.3
5,321,350	-		PP_4683	0.18	-0.5
5,321,390	+		PP_4683	0.20	+0.9
5,321,391	-		PP_4683	0.20	+0.4
5,321,391	-		PP_4683	0.20	-0.4
5,321,520	-		PP_4683	0.25	+0.6
5,321,520	-		PP_4683	0.25	+0.2
5,321,520	-		PP_4683	0.25	-1.3
5,321,520	-		PP_4683	0.25	+0.3
5,321,672	+		PP_4683	0.32	-0.0
5,321,672	+		PP_4683	0.32	-1.6
5,321,672	+		PP_4683	0.32	+0.1
5,321,673	-		PP_4683	0.32	+0.4
5,321,693	+		PP_4683	0.33	+0.9
5,321,694	-		PP_4683	0.33	-1.2
5,321,699	+		PP_4683	0.33	+0.6
5,321,699	+		PP_4683	0.33	-1.0
5,321,699	+		PP_4683	0.33	+0.9
5,321,699	+		PP_4683	0.33	-0.9
5,321,700	-		PP_4683	0.33	+0.5
5,321,700	-		PP_4683	0.33	+0.0
5,321,727	-		PP_4683	0.34	+1.3
5,321,727	-		PP_4683	0.34	-0.2
5,321,804	+		PP_4683	0.38	-1.1
5,321,804	+		PP_4683	0.38	-0.2
5,321,805	-				+0.1
5,321,805	-		PP_4683	0.38	-0.8
5,321,835	-		PP_4683	0.39	+1.1
5,321,835	-		PP_4683	0.39	+0.0
5,321,836	+		PP_4683	0.39	+0.2
5,321,836	+		PP_4683	0.39	-0.3
5,321,836	+		PP_4683	0.39	+0.8
5,321,837	-		PP_4683	0.39	+0.1