Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4607 and PP_4608 overlap by 4 nucleotides PP_4608 and PP_4609 are separated by 5 nucleotides PP_4609 and PP_4610 overlap by 1 nucleotides
PP_4607: PP_4607 - putative Transmembrane sensor, at 5,229,234 to 5,230,214
_4607
PP_4608: PP_4608 - RNA polymerase sigma-70 factor, ECF subfamily, at 5,230,211 to 5,230,786
_4608
PP_4609: PP_4609 - conserved membrane protein of unknown function, at 5,230,792 to 5,231,118
_4609
PP_4610: PP_4610 - conserved protein of unknown function containing PepSY-associated TM helix domain, at 5,231,118 to 5,232,695
_4610
Position (kb)
5230
5231
5232 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5229.844 kb on + strand, within PP_4607 at 5229.845 kb on - strand, within PP_4607 at 5229.845 kb on - strand, within PP_4607 at 5230.072 kb on + strand, within PP_4607 at 5230.294 kb on + strand, within PP_4608 at 5230.295 kb on - strand, within PP_4608 at 5230.295 kb on - strand, within PP_4608 at 5230.295 kb on - strand, within PP_4608 at 5230.295 kb on - strand, within PP_4608 at 5230.295 kb on - strand, within PP_4608 at 5230.347 kb on + strand, within PP_4608 at 5230.348 kb on - strand at 5230.423 kb on + strand, within PP_4608 at 5230.522 kb on + strand, within PP_4608 at 5230.544 kb on + strand, within PP_4608 at 5230.544 kb on + strand, within PP_4608 at 5230.544 kb on + strand, within PP_4608 at 5230.545 kb on - strand, within PP_4608 at 5230.545 kb on - strand, within PP_4608 at 5230.575 kb on + strand, within PP_4608 at 5230.575 kb on + strand, within PP_4608 at 5230.575 kb on + strand, within PP_4608 at 5230.576 kb on - strand at 5230.679 kb on + strand, within PP_4608 at 5230.680 kb on - strand, within PP_4608 at 5230.976 kb on - strand, within PP_4609 at 5231.083 kb on + strand, within PP_4609 at 5231.083 kb on + strand, within PP_4609 at 5231.083 kb on + strand at 5231.083 kb on + strand, within PP_4609 at 5231.083 kb on + strand, within PP_4609 at 5231.084 kb on - strand, within PP_4609 at 5231.084 kb on - strand, within PP_4609 at 5231.084 kb on - strand, within PP_4609 at 5231.084 kb on - strand, within PP_4609 at 5231.179 kb on - strand at 5231.283 kb on + strand, within PP_4610 at 5231.391 kb on - strand, within PP_4610 at 5231.540 kb on + strand, within PP_4610 at 5231.540 kb on + strand, within PP_4610 at 5231.576 kb on + strand, within PP_4610 at 5231.576 kb on + strand, within PP_4610 at 5231.576 kb on + strand, within PP_4610 at 5231.576 kb on + strand, within PP_4610 at 5231.577 kb on - strand, within PP_4610 at 5231.577 kb on - strand, within PP_4610 at 5231.577 kb on - strand, within PP_4610 at 5231.671 kb on + strand, within PP_4610 at 5231.671 kb on + strand, within PP_4610 at 5231.671 kb on + strand, within PP_4610 at 5231.672 kb on - strand, within PP_4610 at 5231.672 kb on - strand, within PP_4610 at 5231.672 kb on - strand, within PP_4610 at 5231.743 kb on - strand, within PP_4610 at 5231.936 kb on - strand, within PP_4610 at 5232.017 kb on - strand, within PP_4610 at 5232.017 kb on - strand, within PP_4610 at 5232.017 kb on - strand, within PP_4610 at 5232.037 kb on + strand, within PP_4610 at 5232.038 kb on - strand, within PP_4610 at 5232.070 kb on + strand, within PP_4610 at 5232.070 kb on + strand, within PP_4610 at 5232.071 kb on - strand, within PP_4610 at 5232.071 kb on - strand, within PP_4610 at 5232.071 kb on - strand, within PP_4610 at 5232.071 kb on - strand, within PP_4610 at 5232.094 kb on + strand, within PP_4610 at 5232.094 kb on + strand, within PP_4610 at 5232.095 kb on - strand, within PP_4610 at 5232.095 kb on - strand, within PP_4610
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 5,229,844 + PP_4607 0.62 -0.8 5,229,845 - PP_4607 0.62 -0.5 5,229,845 - PP_4607 0.62 -0.8 5,230,072 + PP_4607 0.85 +1.3 5,230,294 + PP_4608 0.14 +0.7 5,230,295 - PP_4608 0.15 +0.1 5,230,295 - PP_4608 0.15 +0.1 5,230,295 - PP_4608 0.15 -0.2 5,230,295 - PP_4608 0.15 +0.9 5,230,295 - PP_4608 0.15 +0.9 5,230,347 + PP_4608 0.24 -0.0 5,230,348 - +1.5 5,230,423 + PP_4608 0.37 +0.2 5,230,522 + PP_4608 0.54 +1.2 5,230,544 + PP_4608 0.58 -2.9 5,230,544 + PP_4608 0.58 -0.3 5,230,544 + PP_4608 0.58 +0.0 5,230,545 - PP_4608 0.58 -1.4 5,230,545 - PP_4608 0.58 +1.2 5,230,575 + PP_4608 0.63 +0.6 5,230,575 + PP_4608 0.63 -0.3 5,230,575 + PP_4608 0.63 +1.5 5,230,576 - +0.5 5,230,679 + PP_4608 0.81 -0.0 5,230,680 - PP_4608 0.81 +0.4 5,230,976 - PP_4609 0.56 -0.7 5,231,083 + PP_4609 0.89 +0.0 5,231,083 + PP_4609 0.89 -0.8 5,231,083 + +2.1 5,231,083 + PP_4609 0.89 -1.9 5,231,083 + PP_4609 0.89 -0.7 5,231,084 - PP_4609 0.89 -0.6 5,231,084 - PP_4609 0.89 -1.6 5,231,084 - PP_4609 0.89 -0.7 5,231,084 - PP_4609 0.89 -0.5 5,231,179 - +1.4 5,231,283 + PP_4610 0.10 -0.8 5,231,391 - PP_4610 0.17 +0.1 5,231,540 + PP_4610 0.27 +0.3 5,231,540 + PP_4610 0.27 -0.5 5,231,576 + PP_4610 0.29 -1.0 5,231,576 + PP_4610 0.29 +0.2 5,231,576 + PP_4610 0.29 -0.0 5,231,576 + PP_4610 0.29 -1.2 5,231,577 - PP_4610 0.29 +0.0 5,231,577 - PP_4610 0.29 +0.1 5,231,577 - PP_4610 0.29 -0.0 5,231,671 + PP_4610 0.35 -0.5 5,231,671 + PP_4610 0.35 +0.8 5,231,671 + PP_4610 0.35 +0.2 5,231,672 - PP_4610 0.35 -0.2 5,231,672 - PP_4610 0.35 +0.4 5,231,672 - PP_4610 0.35 +0.3 5,231,743 - PP_4610 0.40 -0.2 5,231,936 - PP_4610 0.52 +0.9 5,232,017 - PP_4610 0.57 +1.5 5,232,017 - PP_4610 0.57 -0.3 5,232,017 - PP_4610 0.57 +0.0 5,232,037 + PP_4610 0.58 +0.2 5,232,038 - PP_4610 0.58 -0.5 5,232,070 + PP_4610 0.60 +0.1 5,232,070 + PP_4610 0.60 +1.6 5,232,071 - PP_4610 0.60 +1.2 5,232,071 - PP_4610 0.60 -2.5 5,232,071 - PP_4610 0.60 -0.4 5,232,071 - PP_4610 0.60 -0.1 5,232,094 + PP_4610 0.62 -0.2 5,232,094 + PP_4610 0.62 +1.2 5,232,095 - PP_4610 0.62 +1.0 5,232,095 - PP_4610 0.62 -1.1
Or see this region's nucleotide sequence