Strain Fitness in Pseudomonas putida KT2440 around PP_4475

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
5,084,336	-				+0.9
5,084,336	-				-0.3
5,084,336	-				+0.9
5,084,336	-				+0.5
5,084,336	-				+0.9
5,084,371	-				+0.2
5,084,376	-				+0.1
5,084,376	-				-0.3
5,084,437	-				+0.1
5,084,437	-				-0.5
5,084,469	-				+0.5
5,084,469	-				+1.0
5,084,507	-				+0.3
5,084,605	+				+1.3
5,084,605	+				+1.0
5,084,605	+				+1.1
5,084,605	+				+1.6
5,084,605	+				+0.9
5,084,606	-				-1.3
5,084,606	-				+0.2
5,084,606	-				+0.6
5,084,606	-				-1.1
5,084,606	-				-1.0
5,085,103	-		PP_4475	0.45	-0.1
5,085,103	-		PP_4475	0.45	-1.4
5,085,156	+		PP_4475	0.50	-3.3
5,085,156	+		PP_4475	0.50	-1.0
5,085,156	+		PP_4475	0.50	-1.1
5,085,157	-		PP_4475	0.50	-0.6
5,085,157	-		PP_4475	0.50	+0.7
5,085,157	-		PP_4475	0.50	+0.2
5,085,158	+		PP_4475	0.50	-0.9
5,085,159	-		PP_4475	0.50	-0.3
5,085,159	-		PP_4475	0.50	-3.0
5,085,164	+		PP_4475	0.51	-0.5
5,085,164	+		PP_4475	0.51	-3.5
5,085,164	+		PP_4475	0.51	+0.5
5,085,164	+		PP_4475	0.51	-0.6
5,085,165	-		PP_4475	0.51	-1.2
5,085,165	-		PP_4475	0.51	-1.0
5,085,165	-		PP_4475	0.51	-1.3
5,085,165	-		PP_4475	0.51	-0.3
5,085,205	-		PP_4475	0.55	-1.2
5,085,215	+		PP_4475	0.56	-0.6
5,085,215	+		PP_4475	0.56	-0.7
5,085,215	+		PP_4475	0.56	-1.2
5,085,216	-		PP_4475	0.56	-0.2
5,085,216	-		PP_4475	0.56	-2.2
5,085,657	+				+0.5
5,085,657	+				-0.1
5,085,657	+				+0.2
5,085,657	+				+0.3
5,085,657	+				-1.1
5,085,657	+				-0.1
5,085,657	+				-1.2
5,085,658	-				+0.4
5,085,658	-				-1.8
5,085,658	-				-0.2
5,085,658	-				+0.1
5,085,669	+				-0.6
5,085,670	-				-1.2
5,085,793	-		PP_4476	0.43	+0.2
5,085,960	-				+2.0
5,085,995	+				-0.1
5,086,042	-				+2.1
5,086,133	+		PP_4477	0.12	+0.8
5,086,133	+		PP_4477	0.12	+0.7
5,086,134	-		PP_4477	0.12	+1.4
5,086,134	-		PP_4477	0.12	+1.9
5,086,304	+		PP_4477	0.25	+2.8
5,086,397	+		PP_4477	0.31	+2.3
5,086,397	+		PP_4477	0.31	+0.9
5,086,397	+		PP_4477	0.31	+2.6
5,086,480	-		PP_4477	0.38	+1.9
5,086,480	-		PP_4477	0.38	+0.8
5,086,551	+		PP_4477	0.43	+2.8
5,086,552	-		PP_4477	0.43	+1.2
5,086,556	-		PP_4477	0.43	+1.1
5,086,616	+		PP_4477	0.48	+2.2
5,086,616	+		PP_4477	0.48	+2.2
5,086,617	-		PP_4477	0.48	+1.7
5,086,617	-		PP_4477	0.48	+2.4
5,086,617	-		PP_4477	0.48	+2.4
5,086,617	-		PP_4477	0.48	+1.3