Strain Fitness in Pseudomonas putida KT2440 around PP_4362

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
4,951,392	+		PP_4361	0.30	+2.6
4,951,392	+		PP_4361	0.30	+2.7
4,951,392	+		PP_4361	0.30	+2.6
4,951,392	+		PP_4361	0.30	+2.8
4,951,393	-		PP_4361	0.30	+2.5
4,951,393	-		PP_4361	0.30	+2.2
4,951,393	-		PP_4361	0.30	+2.6
4,951,640	-		PP_4361	0.50	+3.1
4,951,663	+		PP_4361	0.52	+2.3
4,951,663	+		PP_4361	0.52	+2.6
4,951,664	-		PP_4361	0.52	+2.7
4,952,358	+				-1.7
4,952,378	+				+1.9
4,952,439	-		PP_4362	0.28	-1.5
4,952,627	+		PP_4362	0.83	-0.8
4,952,627	+		PP_4362	0.83	-1.7
4,952,628	-		PP_4362	0.84	-2.3
4,952,628	-		PP_4362	0.84	-1.3
4,952,628	-		PP_4362	0.84	-1.6
4,952,662	+				+0.4
4,952,663	-				+0.9
4,952,676	+				+0.0
4,952,676	+				+1.0
4,952,676	+				-1.3
4,952,676	+				-0.8
4,952,677	-				-1.4
4,952,677	-				-1.2
4,952,677	-				-1.1
4,952,718	+				-1.2
4,952,746	+				-1.6
4,952,746	+				+0.3
4,952,746	+				-1.4
4,952,956	+		PP_4363	0.13	-0.4
4,952,956	+				+0.9
4,952,956	+		PP_4363	0.13	-2.0
4,952,957	-		PP_4363	0.13	+0.9
4,952,957	-		PP_4363	0.13	+0.7
4,952,957	-		PP_4363	0.13	+1.2
4,953,002	+		PP_4363	0.15	+0.1
4,953,005	+		PP_4363	0.16	+0.3
4,953,005	+		PP_4363	0.16	-0.9
4,953,080	+		PP_4363	0.20	+0.8
4,953,081	-		PP_4363	0.20	+1.7
4,953,081	-		PP_4363	0.20	+1.7
4,953,081	-		PP_4363	0.20	+0.4
4,953,081	-		PP_4363	0.20	+0.9
4,953,114	+		PP_4363	0.22	-0.1
4,953,115	-		PP_4363	0.22	+1.0
4,953,159	-		PP_4363	0.25	+0.4
4,953,240	+		PP_4363	0.30	-0.7
4,953,240	+		PP_4363	0.30	+1.3
4,953,240	+		PP_4363	0.30	-0.4
4,953,240	+		PP_4363	0.30	-1.5
4,953,240	+		PP_4363	0.30	-1.2
4,953,248	+		PP_4363	0.30	+1.0
4,953,249	-		PP_4363	0.30	+0.6
4,953,249	-		PP_4363	0.30	+0.6
4,953,249	-		PP_4363	0.30	+0.3
4,953,294	+		PP_4363	0.33	-0.1
4,953,413	-		PP_4363	0.40	+1.1
4,953,612	+		PP_4363	0.52	-0.6
4,953,612	+		PP_4363	0.52	+0.3
4,953,613	-		PP_4363	0.52	+1.3
4,953,681	+		PP_4363	0.56	+0.9
4,953,681	+		PP_4363	0.56	+0.8
4,953,682	-		PP_4363	0.56	+0.1