Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4334 and PP_4335 are separated by 118 nucleotides PP_4335 and PP_4336 are separated by 3 nucleotides PP_4336 and PP_4337 overlap by 1 nucleotides
PP_4334: PP_4334 - ParA family protein, at 4,924,195 to 4,925,049
_4334
PP_4335: PP_4335 - flagellar motor protein, at 4,925,168 to 4,926,025
_4335
PP_4336: PP_4336 - flagellar motor rotation protein, at 4,926,029 to 4,926,769
_4336
PP_4337: PP_4337 - chemotaxis response regulator protein-glutamate methylesterase of group 1 operon, at 4,926,769 to 4,927,881
_4337
Position (kb)
4926
4927 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4925.056 kb on + strand at 4925.056 kb on + strand at 4925.056 kb on + strand at 4925.056 kb on + strand at 4925.056 kb on + strand at 4925.056 kb on + strand at 4925.057 kb on - strand at 4925.057 kb on - strand at 4925.069 kb on - strand at 4925.098 kb on + strand at 4925.098 kb on + strand at 4925.166 kb on + strand at 4925.192 kb on + strand at 4925.192 kb on + strand at 4925.467 kb on + strand, within PP_4335 at 4925.467 kb on + strand, within PP_4335 at 4925.472 kb on + strand, within PP_4335 at 4925.472 kb on + strand, within PP_4335 at 4925.473 kb on - strand, within PP_4335 at 4925.473 kb on - strand, within PP_4335 at 4925.473 kb on - strand, within PP_4335 at 4925.861 kb on + strand, within PP_4335 at 4925.884 kb on + strand, within PP_4335 at 4925.892 kb on + strand, within PP_4335 at 4925.892 kb on + strand, within PP_4335 at 4925.892 kb on + strand, within PP_4335 at 4925.892 kb on + strand, within PP_4335 at 4925.893 kb on - strand, within PP_4335 at 4925.893 kb on - strand, within PP_4335 at 4925.893 kb on - strand, within PP_4335 at 4925.896 kb on + strand, within PP_4335 at 4925.897 kb on - strand, within PP_4335 at 4925.897 kb on - strand, within PP_4335 at 4925.897 kb on - strand, within PP_4335 at 4925.922 kb on + strand, within PP_4335 at 4925.922 kb on + strand, within PP_4335 at 4925.922 kb on + strand, within PP_4335 at 4925.923 kb on - strand, within PP_4335 at 4925.967 kb on + strand at 4925.967 kb on + strand at 4926.170 kb on + strand at 4926.171 kb on - strand, within PP_4336 at 4926.171 kb on - strand, within PP_4336 at 4926.198 kb on + strand, within PP_4336 at 4926.274 kb on + strand, within PP_4336 at 4926.275 kb on - strand, within PP_4336 at 4926.316 kb on - strand, within PP_4336 at 4926.336 kb on - strand, within PP_4336 at 4926.336 kb on - strand, within PP_4336 at 4926.371 kb on - strand, within PP_4336 at 4926.450 kb on + strand, within PP_4336 at 4926.450 kb on + strand, within PP_4336 at 4926.612 kb on - strand, within PP_4336 at 4926.815 kb on + strand at 4926.815 kb on + strand at 4926.863 kb on + strand at 4926.863 kb on + strand at 4926.863 kb on + strand at 4926.864 kb on - strand at 4926.986 kb on + strand, within PP_4337 at 4926.986 kb on + strand, within PP_4337 at 4926.987 kb on - strand, within PP_4337 at 4927.031 kb on + strand, within PP_4337 at 4927.031 kb on + strand, within PP_4337 at 4927.306 kb on - strand, within PP_4337 at 4927.306 kb on - strand, within PP_4337 at 4927.420 kb on - strand, within PP_4337 at 4927.466 kb on + strand, within PP_4337 at 4927.466 kb on + strand, within PP_4337 at 4927.466 kb on + strand, within PP_4337 at 4927.466 kb on + strand, within PP_4337 at 4927.689 kb on + strand, within PP_4337
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 4,925,056 + +2.5 4,925,056 + +2.3 4,925,056 + +2.2 4,925,056 + +2.6 4,925,056 + +2.2 4,925,056 + +1.9 4,925,057 - +0.9 4,925,057 - -0.7 4,925,069 - -0.5 4,925,098 + +0.7 4,925,098 + +1.1 4,925,166 + +2.2 4,925,192 + +2.3 4,925,192 + +1.7 4,925,467 + PP_4335 0.35 +0.3 4,925,467 + PP_4335 0.35 -0.9 4,925,472 + PP_4335 0.35 +0.4 4,925,472 + PP_4335 0.35 -2.9 4,925,473 - PP_4335 0.36 -0.6 4,925,473 - PP_4335 0.36 +0.4 4,925,473 - PP_4335 0.36 +0.6 4,925,861 + PP_4335 0.81 -0.1 4,925,884 + PP_4335 0.83 -0.9 4,925,892 + PP_4335 0.84 -0.9 4,925,892 + PP_4335 0.84 -1.1 4,925,892 + PP_4335 0.84 +0.2 4,925,892 + PP_4335 0.84 -0.9 4,925,893 - PP_4335 0.84 -1.2 4,925,893 - PP_4335 0.84 -0.7 4,925,893 - PP_4335 0.84 -1.5 4,925,896 + PP_4335 0.85 -2.8 4,925,897 - PP_4335 0.85 -0.6 4,925,897 - PP_4335 0.85 +0.1 4,925,897 - PP_4335 0.85 +1.0 4,925,922 + PP_4335 0.88 +0.3 4,925,922 + PP_4335 0.88 -0.8 4,925,922 + PP_4335 0.88 +0.0 4,925,923 - PP_4335 0.88 +0.4 4,925,967 + +1.4 4,925,967 + -1.4 4,926,170 + +0.9 4,926,171 - PP_4336 0.19 -0.5 4,926,171 - PP_4336 0.19 -1.0 4,926,198 + PP_4336 0.23 -0.0 4,926,274 + PP_4336 0.33 -0.5 4,926,275 - PP_4336 0.33 -0.9 4,926,316 - PP_4336 0.39 -1.9 4,926,336 - PP_4336 0.41 -0.8 4,926,336 - PP_4336 0.41 -1.0 4,926,371 - PP_4336 0.46 -1.2 4,926,450 + PP_4336 0.57 +1.0 4,926,450 + PP_4336 0.57 -0.5 4,926,612 - PP_4336 0.79 -0.3 4,926,815 + +0.2 4,926,815 + -0.6 4,926,863 + +0.1 4,926,863 + -0.2 4,926,863 + +0.2 4,926,864 - -0.1 4,926,986 + PP_4337 0.19 -0.3 4,926,986 + PP_4337 0.19 -0.1 4,926,987 - PP_4337 0.20 -0.9 4,927,031 + PP_4337 0.24 +0.1 4,927,031 + PP_4337 0.24 -0.3 4,927,306 - PP_4337 0.48 -0.9 4,927,306 - PP_4337 0.48 -1.3 4,927,420 - PP_4337 0.58 +0.2 4,927,466 + PP_4337 0.63 -0.6 4,927,466 + PP_4337 0.63 +0.2 4,927,466 + PP_4337 0.63 +0.3 4,927,466 + PP_4337 0.63 -0.1 4,927,689 + PP_4337 0.83 -0.1
Or see this region's nucleotide sequence