Strain Fitness in Pseudomonas putida KT2440 around PP_4336

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
4,925,056	+				+2.5
4,925,056	+				+2.3
4,925,056	+				+2.2
4,925,056	+				+2.6
4,925,056	+				+2.2
4,925,056	+				+1.9
4,925,057	-				+0.9
4,925,057	-				-0.7
4,925,069	-				-0.5
4,925,098	+				+0.7
4,925,098	+				+1.1
4,925,166	+				+2.2
4,925,192	+				+2.3
4,925,192	+				+1.7
4,925,467	+		PP_4335	0.35	+0.3
4,925,467	+		PP_4335	0.35	-0.9
4,925,472	+		PP_4335	0.35	+0.4
4,925,472	+		PP_4335	0.35	-2.9
4,925,473	-		PP_4335	0.36	-0.6
4,925,473	-		PP_4335	0.36	+0.4
4,925,473	-		PP_4335	0.36	+0.6
4,925,861	+		PP_4335	0.81	-0.1
4,925,884	+		PP_4335	0.83	-0.9
4,925,892	+		PP_4335	0.84	-0.9
4,925,892	+		PP_4335	0.84	-1.1
4,925,892	+		PP_4335	0.84	+0.2
4,925,892	+		PP_4335	0.84	-0.9
4,925,893	-		PP_4335	0.84	-1.2
4,925,893	-		PP_4335	0.84	-0.7
4,925,893	-		PP_4335	0.84	-1.5
4,925,896	+		PP_4335	0.85	-2.8
4,925,897	-		PP_4335	0.85	-0.6
4,925,897	-		PP_4335	0.85	+0.1
4,925,897	-		PP_4335	0.85	+1.0
4,925,922	+		PP_4335	0.88	+0.3
4,925,922	+		PP_4335	0.88	-0.8
4,925,922	+		PP_4335	0.88	+0.0
4,925,923	-		PP_4335	0.88	+0.4
4,925,967	+				+1.4
4,925,967	+				-1.4
4,926,170	+				+0.9
4,926,171	-		PP_4336	0.19	-0.5
4,926,171	-		PP_4336	0.19	-1.0
4,926,198	+		PP_4336	0.23	-0.0
4,926,274	+		PP_4336	0.33	-0.5
4,926,275	-		PP_4336	0.33	-0.9
4,926,316	-		PP_4336	0.39	-1.9
4,926,336	-		PP_4336	0.41	-0.8
4,926,336	-		PP_4336	0.41	-1.0
4,926,371	-		PP_4336	0.46	-1.2
4,926,450	+		PP_4336	0.57	+1.0
4,926,450	+		PP_4336	0.57	-0.5
4,926,612	-		PP_4336	0.79	-0.3
4,926,815	+				+0.2
4,926,815	+				-0.6
4,926,863	+				+0.1
4,926,863	+				-0.2
4,926,863	+				+0.2
4,926,864	-				-0.1
4,926,986	+		PP_4337	0.19	-0.3
4,926,986	+		PP_4337	0.19	-0.1
4,926,987	-		PP_4337	0.20	-0.9
4,927,031	+		PP_4337	0.24	+0.1
4,927,031	+		PP_4337	0.24	-0.3
4,927,306	-		PP_4337	0.48	-0.9
4,927,306	-		PP_4337	0.48	-1.3
4,927,420	-		PP_4337	0.58	+0.2
4,927,466	+		PP_4337	0.63	-0.6
4,927,466	+		PP_4337	0.63	+0.2
4,927,466	+		PP_4337	0.63	+0.3
4,927,466	+		PP_4337	0.63	-0.1
4,927,689	+		PP_4337	0.83	-0.1