Strain Fitness in Pseudomonas putida KT2440 around PP_4317

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
4,906,835	+				+1.4
4,906,836	-				-1.6
4,907,024	+		PP_4316	0.19	-0.1
4,907,025	-		PP_4316	0.19	+1.4
4,907,118	+		PP_4316	0.29	-0.4
4,907,247	+		PP_4316	0.42	-1.3
4,907,248	-		PP_4316	0.42	-1.0
4,907,248	-		PP_4316	0.42	-0.8
4,907,280	+		PP_4316	0.46	-1.7
4,907,280	+		PP_4316	0.46	-0.5
4,907,280	+		PP_4316	0.46	+0.7
4,907,280	+		PP_4316	0.46	-0.4
4,907,557	-		PP_4316	0.75	-1.9
4,907,618	+		PP_4316	0.82	-0.6
4,907,745	+				-2.4
4,907,745	+				+0.1
4,907,818	+				-0.9
4,907,818	+				-0.8
4,907,838	+				+0.8
4,907,839	-				-0.4
4,907,853	+		PP_4317	0.13	-1.0
4,907,869	+		PP_4317	0.21	-0.6
4,907,870	-		PP_4317	0.22	-0.1