Strain Fitness in Pseudomonas putida KT2440 around PP_4235

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
4,807,591	-		PP_4234	0.89	-0.5
4,808,030	-				-0.6
4,808,030	-				+0.3
4,808,030	-				+0.1
4,808,031	+				-0.2
4,808,032	-				+0.5
4,808,064	+				+0.3
4,808,064	+				+0.7
4,808,064	+				-1.1
4,808,351	+				-0.0
4,808,351	+				+0.4
4,808,351	+				+0.4
4,808,351	+				-0.6
4,808,352	-				-1.0
4,808,355	-				+0.2
4,808,355	-				-0.0
4,808,394	+				+0.7
4,808,394	+				-0.9
4,808,394	+				-1.0
4,808,395	-				-0.3
4,808,395	-				-0.5
4,808,477	+				-3.0
4,808,590	+				-0.9
4,808,590	+				-0.1
4,808,590	+				-0.3
4,808,614	+				+0.9
4,808,614	+				+0.2
4,808,614	+				+0.4
4,808,614	+				-1.2
4,808,614	+				+0.2
4,808,615	-				-1.4
4,808,615	-				+1.2
4,808,615	-				-2.7
4,808,620	+		PP_4235	0.10	-0.1
4,808,621	-		PP_4235	0.10	-2.1
4,808,621	-		PP_4235	0.10	+0.9
4,808,723	-		PP_4235	0.16	+0.3
4,808,723	-		PP_4235	0.16	-2.3
4,808,744	+		PP_4235	0.17	-1.2
4,808,745	-		PP_4235	0.17	-2.4
4,808,745	-		PP_4235	0.17	-2.0
4,808,745	-		PP_4235	0.17	+2.3
4,809,058	+		PP_4235	0.36	-0.7
4,809,059	-		PP_4235	0.36	-2.5
4,809,083	-		PP_4235	0.37	-0.9
4,809,283	+		PP_4235	0.49	+1.7
4,809,284	-		PP_4235	0.49	+0.0
4,809,320	+		PP_4235	0.51	+0.2
4,809,321	-		PP_4235	0.51	-1.8
4,809,321	-		PP_4235	0.51	-2.2
4,809,364	+		PP_4235	0.53	+0.2
4,809,364	+		PP_4235	0.53	-0.5
4,809,365	-		PP_4235	0.54	-0.8
4,809,365	-		PP_4235	0.54	-0.3
4,809,365	-		PP_4235	0.54	+0.1
4,809,453	-		PP_4235	0.59	-1.6
4,809,469	+				+0.9
4,809,544	+		PP_4235	0.64	-1.3
4,809,740	+		PP_4235	0.75	-0.5
4,809,740	+		PP_4235	0.75	-0.4
4,809,740	+		PP_4235	0.75	-0.3
4,809,880	+		PP_4235	0.84	+0.3
4,809,883	+		PP_4235	0.84	-0.9
4,809,883	+		PP_4235	0.84	+0.2
4,809,883	+		PP_4235	0.84	-0.5
4,809,883	+		PP_4235	0.84	-0.4
4,809,884	-		PP_4235	0.84	-0.7
4,809,884	-		PP_4235	0.84	-1.0
4,809,884	-		PP_4235	0.84	-1.1
4,809,926	+		PP_4235	0.86	-0.7
4,809,927	-		PP_4235	0.86	-1.3
4,809,944	+		PP_4235	0.87	-0.5
4,809,944	+		PP_4235	0.87	+1.1
4,809,945	-		PP_4235	0.87	-0.9
4,809,945	-		PP_4235	0.87	-1.8
4,809,966	-		PP_4235	0.89	+0.0
4,810,347	+		PP_4236	0.22	-1.4
4,810,359	+		PP_4236	0.24	+0.1
4,810,359	+		PP_4236	0.24	+0.0
4,810,360	-		PP_4236	0.24	-0.1
4,810,360	-		PP_4236	0.24	-0.9
4,810,548	+		PP_4236	0.46	+0.1
4,810,548	+		PP_4236	0.46	-2.3
4,810,620	+		PP_4236	0.55	-2.3
4,810,621	-		PP_4236	0.55	-2.8
4,810,875	+		PP_4236	0.85	-1.0
4,810,875	+		PP_4236	0.85	-2.9
4,811,149	+		PP_4237	0.20	-0.7