Strain Fitness in Pseudomonas putida KT2440 around PP_3541

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
4,013,062	+				-0.3
4,013,062	+				-1.7
4,013,062	+				-0.5
4,013,062	+				+1.0
4,013,063	-				+0.9
4,013,100	+				-0.3
4,013,100	+				-0.5
4,013,101	-				-0.3
4,013,235	+				-0.0
4,013,236	-				-0.8
4,013,236	-				-0.6
4,013,237	+				-0.9
4,013,401	+				-0.1
4,013,401	+				-1.6
4,013,402	-				-0.4
4,013,412	-				+0.3
4,013,467	+				-1.3
4,013,533	+				-1.9
4,013,534	-				+0.7
4,013,534	-				-1.1
4,013,550	+				-0.4
4,013,551	-				+0.3
4,013,682	-		PP_3541	0.16	-2.4
4,013,765	+		PP_3541	0.32	-0.0
4,013,815	+		PP_3541	0.42	-1.3
4,014,142	+				-1.6
4,014,199	-				-1.5
4,014,199	-				-0.6
4,014,261	-				+0.2
4,014,519	+				-0.5
4,014,519	+				-0.7
4,014,562	+				-0.7
4,014,605	+				+1.2
4,014,606	-				-0.1
4,014,606	-				-0.1
4,014,654	-				+0.4
4,014,654	-				-1.2
4,014,666	-				+1.9
4,014,725	+				+0.4
4,014,748	-				-0.1
4,014,752	+				+0.0
4,014,752	+				+0.3
4,014,958	-		PP_3543	0.22	-0.8
4,014,981	+		PP_3543	0.24	-0.8