Strain Fitness in Pseudomonas putida KT2440 around PP_2525

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,870,928	+				+0.2
2,870,929	-				-0.8
2,870,929	-				-0.1
2,870,930	+				-2.8
2,870,930	+				+0.8
2,871,056	-				+1.7
2,871,056	-				+1.0
2,871,079	+				+0.1
2,871,120	+				+0.5
2,871,120	+				+1.1
2,871,153	+				-0.4
2,871,215	+				-0.6
2,871,215	+				-0.1
2,871,216	-				+0.5
2,871,247	+				+0.1
2,871,277	+				+1.4
2,871,278	-				+0.3
2,871,321	+		PP_2524	0.15	+1.0
2,871,440	+				+2.1
2,871,440	+		PP_2524	0.33	+0.3
2,871,441	-		PP_2524	0.33	+0.9
2,871,527	+		PP_2524	0.46	+0.1
2,871,528	-		PP_2524	0.46	-1.0
2,871,554	-		PP_2524	0.50	+1.0
2,871,652	+		PP_2524	0.65	-0.3
2,871,683	-		PP_2524	0.70	-0.8
2,871,683	-		PP_2524	0.70	+0.8
2,871,783	+		PP_2524	0.85	-0.3
2,871,784	-		PP_2524	0.85	+0.2
2,871,784	-		PP_2524	0.85	-0.3
2,871,894	+				+0.9
2,871,895	-				+1.1
2,871,992	+				-0.7
2,871,993	-				-0.6
2,872,050	-		PP_2525	0.12	-0.5
2,872,265	+		PP_2525	0.30	-0.1
2,872,266	-		PP_2525	0.30	-0.6
2,872,695	-		PP_2525	0.67	-1.3
2,873,046	+				-1.4
2,873,065	+				-0.3
2,873,066	-				-0.5
2,873,183	+				+0.8
2,873,183	+				+0.1
2,873,183	+				-0.3
2,873,184	-				+2.2
2,873,185	+				+1.2
2,873,186	-				-0.5
2,873,186	-				+1.9
2,873,448	-		PP_2526	0.48	+1.0
2,873,596	+		PP_2526	0.79	-0.2
2,873,596	+		PP_2526	0.79	-0.1
2,873,605	+		PP_2526	0.81	-0.3
2,873,665	+				-0.4
2,873,666	-				-0.6
2,873,666	-				+0.1
2,873,666	-				+0.5
2,873,891	+		PP_2527	0.15	+0.2
2,873,891	+		PP_2527	0.15	-0.6