Strain Fitness in Pseudomonas putida KT2440 around PP_2354

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,684,571	+				-0.3
2,684,571	+				+0.4
2,684,575	-				-0.1
2,684,575	-				+0.3
2,684,575	-				-1.0
2,684,610	-				-1.1
2,684,641	+				+1.1
2,684,642	-				-0.4
2,684,674	+		PP_5520	0.14	+0.1
2,684,674	+		PP_5520	0.14	-0.7
2,684,674	+		PP_5520	0.14	-0.2
2,684,674	+		PP_5520	0.14	-0.2
2,684,730	-		PP_5520	0.37	-0.0
2,684,780	-		PP_5520	0.58	+0.6
2,684,780	-		PP_5520	0.58	+2.7
2,684,780	-		PP_5520	0.58	-0.2
2,684,912	+				-0.4
2,684,912	+				-0.8
2,685,052	+				-0.2
2,685,229	-				+1.5
2,685,236	-				+0.3
2,685,236	-				+1.4
2,685,236	-				+0.5
2,685,444	-				-1.6
2,685,634	+		PP_2354	0.13	-0.5
2,685,635	-		PP_2354	0.13	-0.6
2,685,673	+		PP_2354	0.14	-0.8
2,685,674	-		PP_2354	0.14	+0.4
2,685,674	-		PP_2354	0.14	-1.6
2,685,752	-		PP_2354	0.18	+0.0
2,685,765	-		PP_2354	0.18	-0.6
2,685,765	-		PP_2354	0.18	-1.9
2,685,889	-		PP_2354	0.23	-1.3
2,685,889	-		PP_2354	0.23	-2.9
2,685,889	-		PP_2354	0.23	-0.8
2,685,904	+		PP_2354	0.24	-0.9
2,685,955	+		PP_2354	0.26	-1.8
2,685,955	+		PP_2354	0.26	-1.0
2,685,955	+		PP_2354	0.26	+0.2
2,685,956	-		PP_2354	0.26	-0.1
2,685,956	-		PP_2354	0.26	-0.3
2,685,965	+		PP_2354	0.26	-0.2
2,685,965	+		PP_2354	0.26	-0.9
2,685,966	-		PP_2354	0.26	-0.7
2,685,966	-		PP_2354	0.26	-2.6
2,686,210	-		PP_2354	0.37	-3.2
2,686,210	-		PP_2354	0.37	-0.1
2,686,430	-		PP_2354	0.46	-1.4
2,686,577	+		PP_2354	0.52	-1.3
2,686,578	-		PP_2354	0.52	-0.4
2,686,703	-		PP_2354	0.57	-0.7
2,686,964	-		PP_2354	0.68	-0.8
2,686,964	-		PP_2354	0.68	-0.3
2,686,964	-		PP_2354	0.68	-0.8
2,687,141	+		PP_2354	0.76	-1.5
2,687,154	-		PP_2354	0.76	-2.0
2,687,347	+		PP_2354	0.84	-1.5
2,687,408	+		PP_2354	0.87	-2.9
2,687,408	+		PP_2354	0.87	-2.2
2,687,409	-		PP_2354	0.87	+0.5
2,687,457	-		PP_2354	0.89	-0.5
2,687,473	+		PP_2354	0.90	-1.9
2,687,474	-		PP_2354	0.90	-1.5
2,687,474	-		PP_2354	0.90	-2.7
2,687,567	+				-0.6
2,687,661	+				-0.8
2,687,662	-				-2.1
2,687,698	+				-0.1
2,687,698	+				-0.9
2,687,699	-				-0.8
2,687,801	+		PP_2355	0.14	-0.5
2,687,859	+		PP_2355	0.27	+0.4
2,687,860	-		PP_2355	0.27	+1.0
2,687,860	-		PP_2355	0.27	-0.1
2,687,860	-		PP_2355	0.27	+0.2
2,687,860	-		PP_2355	0.27	+1.4
2,688,011	+		PP_2355	0.60	-1.0
2,688,048	+		PP_2355	0.68	-0.7
2,688,069	+		PP_2355	0.72	-0.2
2,688,070	-		PP_2355	0.73	-0.4
2,688,202	+				-0.9
2,688,217	+				-0.6
2,688,217	+				-0.6
2,688,217	+				+2.5
2,688,218	-				-0.8
2,688,314	+				-2.2
2,688,315	-				-1.7
2,688,315	-				-1.8
2,688,315	-				-1.1
2,688,458	+		PP_2356	0.11	-0.2
2,688,459	-		PP_2356	0.11	-2.2
2,688,488	-				-1.1
2,688,501	+		PP_2356	0.13	-1.7
2,688,501	+		PP_2356	0.13	-1.7
2,688,502	-		PP_2356	0.13	-1.7
2,688,609	+		PP_2356	0.18	-0.1
2,688,609	+		PP_2356	0.18	-1.8
2,688,610	-		PP_2356	0.18	-1.8