Strain Fitness in Pseudomonas putida KT2440 around PP_2253

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,568,976	+		PP_2252	0.46	+0.6
2,569,256	-		PP_2252	0.72	-2.7
2,569,256	-		PP_2252	0.72	-1.1
2,569,256	-		PP_2252	0.72	-2.7
2,569,295	-		PP_2252	0.76	+0.4
2,569,376	-		PP_2252	0.84	+0.3
2,569,376	-		PP_2252	0.84	-1.3
2,569,455	+				-0.1
2,569,455	+				+0.1
2,569,456	-				-1.1
2,569,588	+				+0.1
2,569,588	+				+0.1
2,569,590	+				+1.5
2,569,590	+				-0.3
2,569,590	+				+0.4
2,569,590	+				-0.6
2,569,591	-				-0.3
2,569,591	-				-0.9
2,570,000	-		PP_2253	0.45	-0.3
2,570,295	+		PP_2253	0.89	-0.5
2,570,297	+		PP_2253	0.89	-1.2
2,570,411	-				-1.0
2,570,411	-				+0.4
2,570,661	+		PP_2254	0.40	-1.9
2,570,661	+		PP_2254	0.40	-0.0
2,570,661	+		PP_2254	0.40	+0.1
2,570,661	+		PP_2254	0.40	+0.8
2,570,661	+		PP_2254	0.40	+0.6
2,570,662	-		PP_2254	0.40	-0.2
2,570,662	-		PP_2254	0.40	-0.1