Strain Fitness in Pseudomonas putida KT2440 around PP_2219

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,530,947	+		PP_2219	0.50	-0.2
2,530,948	-		PP_2219	0.50	+1.3
2,530,950	+		PP_2219	0.51	+0.3
2,530,951	-		PP_2219	0.51	+0.1
2,530,951	-		PP_2219	0.51	-0.3
2,531,049	+		PP_2219	0.78	+0.5
2,531,050	-		PP_2219	0.78	+1.5
2,531,050	-		PP_2219	0.78	-0.1
2,531,066	+		PP_2219	0.82	+1.1
2,531,067	-		PP_2219	0.83	+1.9
2,531,111	+				+1.0
2,531,111	+				+0.7
2,531,111	+				+0.2
2,531,111	+				+1.0
2,531,111	+				-1.1
2,531,112	-				+0.2
2,531,112	-				+0.5
2,531,112	-				+0.5
2,531,205	+				+0.5
2,531,205	+				+1.5
2,531,205	+				+2.2
2,531,205	+				+0.1
2,531,206	-				-0.2
2,531,206	-				+1.5
2,531,206	-				+1.1
2,531,206	-				+0.6
2,531,206	-				+0.6
2,531,206	-				+0.6
2,531,235	-		PP_2220	0.17	+0.5
2,531,357	+		PP_2220	0.47	+1.4
2,531,357	+		PP_2220	0.47	+1.1
2,531,358	-		PP_2220	0.47	+1.8
2,531,358	-		PP_2220	0.47	+0.4
2,531,358	-		PP_2220	0.47	+1.5
2,531,369	-		PP_2220	0.50	+1.3
2,531,426	+		PP_2220	0.64	-0.1
2,531,427	-		PP_2220	0.64	+0.8
2,531,511	+		PP_2220	0.85	+1.2
2,531,512	-		PP_2220	0.85	-0.8
2,531,566	+				-0.0
2,531,566	+				+0.6
2,531,567	-				+1.2
2,531,567	-				+1.5
2,531,569	-				+0.9
2,531,601	+				+0.2
2,531,702	+				-1.4
2,531,702	+				+0.8
2,531,702	+				+1.1
2,531,702	+				-0.6
2,531,703	-				+2.1
2,531,703	-				+1.5
2,531,703	-				+1.1
2,531,780	+		PP_2222	0.17	+1.8
2,531,781	-		PP_2222	0.18	+1.8
2,531,781	-		PP_2222	0.18	+1.3
2,531,781	-		PP_2222	0.18	+2.4
2,531,823	+		PP_2222	0.39	+0.0
2,531,823	+		PP_2222	0.39	+0.2
2,531,824	-		PP_2222	0.39	+2.2
2,531,824	-		PP_2222	0.39	+2.0
2,531,824	-		PP_2222	0.39	+1.9
2,531,986	+				+0.3
2,531,986	+				+0.2
2,531,987	-				+1.8
2,531,987	-				+2.5
2,531,987	-				+2.2
2,532,000	+				+0.4
2,532,000	+				-0.1
2,532,001	-				+0.8
2,532,032	+				-1.1
2,532,033	-				+1.5