Strain Fitness in Pseudomonas putida KT2440 around PP_2055

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,337,245	-				-1.2
2,337,255	+				+0.5
2,337,255	+				+0.6
2,337,400	+		PP_2054	0.26	+0.4
2,337,559	-		PP_2054	0.44	+0.0
2,337,719	-		PP_2054	0.62	-0.7
2,337,746	-		PP_2054	0.65	+0.2
2,338,055	-				+0.0
2,338,140	+				+1.0
2,338,227	+				+0.6
2,338,227	+				+0.2
2,338,227	+				-0.0
2,338,536	+		PP_2055	0.30	-0.3
2,338,537	-		PP_2055	0.30	-1.5
2,338,982	+		PP_2055	0.72	-0.9
2,339,006	+		PP_2055	0.74	-1.2
2,339,006	+		PP_2055	0.74	-0.0
2,339,007	-		PP_2055	0.74	-1.9
2,339,264	-				+1.1
2,339,285	+				-0.6
2,339,380	+				+0.1
2,339,641	+		PP_2056	0.22	+0.9
2,339,642	-		PP_2056	0.22	-0.9
2,339,710	+		PP_2056	0.27	-0.7
2,339,923	+		PP_2056	0.43	+1.1
2,339,991	+		PP_2056	0.48	-0.6
2,339,992	-		PP_2056	0.48	+0.0
2,340,031	+		PP_2056	0.51	-0.8
2,340,031	+		PP_2056	0.51	-0.2
2,340,032	-		PP_2056	0.51	-1.6
2,340,032	-		PP_2056	0.51	-0.6
2,340,032	-		PP_2056	0.51	-0.0
2,340,244	+		PP_2056	0.68	+0.2
2,340,265	-		PP_2056	0.69	-1.2
2,340,274	+		PP_2056	0.70	+0.2
2,340,274	+		PP_2056	0.70	-0.4
2,340,274	+		PP_2056	0.70	-0.0
2,340,274	+		PP_2056	0.70	-0.3
2,340,274	+		PP_2056	0.70	+1.0
2,340,274	+		PP_2056	0.70	-0.3
2,340,275	-		PP_2056	0.70	+0.5