Strain Fitness in Pseudomonas putida KT2440 around PP_1908

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
2,152,106	+		PP_1906	0.82	+0.3
2,152,172	+		PP_1906	0.89	+0.6
2,152,186	-				+0.4
2,152,290	-				+0.7
2,152,290	-				+0.5
2,152,296	+				-0.2
2,152,296	+				+0.2
2,152,297	-				+0.0
2,152,342	+				-0.9
2,152,414	+		PP_1907	0.20	+2.9
2,152,500	-		PP_1907	0.33	-0.1
2,152,500	-		PP_1907	0.33	+0.5
2,152,500	-		PP_1907	0.33	-0.2
2,152,500	-		PP_1907	0.33	+0.1
2,152,511	+		PP_1907	0.35	+0.4
2,152,511	+		PP_1907	0.35	+0.1
2,152,511	+		PP_1907	0.35	+1.4
2,152,512	-		PP_1907	0.35	+0.8
2,152,838	+		PP_1907	0.83	+0.9
2,152,839	-		PP_1907	0.83	-0.2
2,152,839	-		PP_1907	0.83	+1.5
2,152,884	+				+1.3
2,152,884	+				-0.7
2,152,884	+				+0.8
2,152,884	+				+0.7
2,152,884	+				-0.4
2,152,884	+				+0.0
2,152,885	-				-0.9
2,152,885	-				+0.2
2,152,949	+				-0.2
2,152,949	+				+0.8
2,152,950	-				+1.3
2,152,953	+				+0.1
2,152,953	+				+1.3
2,152,953	+				+1.2
2,152,953	+				+0.4
2,152,953	+				-0.1
2,152,953	+				+0.3
2,152,953	+				+0.1
2,152,953	+				+0.3
2,152,953	+				+0.8
2,152,953	+				-0.3
2,152,954	-				+0.8
2,152,954	-				+1.3
2,152,954	-				+0.5
2,152,954	-				+0.4
2,152,954	-				-0.0
2,152,954	-				-0.2
2,152,954	-				-0.8
2,152,954	-				-1.4
2,153,112	-		PP_1908	0.16	+1.5
2,153,342	+		PP_1908	0.39	+0.4
2,153,343	-				+1.7
2,153,348	+		PP_1908	0.39	+0.8
2,153,348	+		PP_1908	0.39	+1.4
2,153,396	+		PP_1908	0.44	+0.9
2,153,433	-		PP_1908	0.48	-0.0
2,153,435	+		PP_1908	0.48	+0.1
2,153,435	+		PP_1908	0.48	+0.7
2,153,435	+		PP_1908	0.48	+1.3
2,153,435	+		PP_1908	0.48	-0.1
2,153,436	-		PP_1908	0.48	+0.1
2,153,436	-		PP_1908	0.48	+1.4
2,153,436	-		PP_1908	0.48	+1.4
2,153,436	-		PP_1908	0.48	+1.1
2,153,462	+		PP_1908	0.51	-0.7
2,153,462	+		PP_1908	0.51	+1.2
2,153,463	-		PP_1908	0.51	-0.5
2,153,463	-		PP_1908	0.51	+0.5
2,153,463	-		PP_1908	0.51	-0.1
2,153,513	+		PP_1908	0.56	-0.1
2,153,541	+		PP_1908	0.59	+0.5
2,153,563	+		PP_1908	0.61	+1.1
2,153,563	+		PP_1908	0.61	+0.6
2,153,563	+		PP_1908	0.61	+0.8
2,153,563	+		PP_1908	0.61	+1.2
2,153,563	+		PP_1908	0.61	-0.1
2,153,563	+		PP_1908	0.61	-0.2
2,153,563	+		PP_1908	0.61	+0.8
2,153,563	+		PP_1908	0.61	+0.1
2,153,564	-		PP_1908	0.61	-0.3
2,153,564	-		PP_1908	0.61	+1.6
2,153,564	-		PP_1908	0.61	+0.4
2,153,564	-		PP_1908	0.61	+1.0
2,153,564	-		PP_1908	0.61	-0.6
2,153,707	+		PP_1908	0.76	+0.3
2,153,798	+		PP_1908	0.85	+0.9
2,153,798	+		PP_1908	0.85	+1.0
2,153,798	+		PP_1908	0.85	-0.1
2,153,798	+		PP_1908	0.85	-0.1
2,153,799	-		PP_1908	0.85	+1.2
2,153,799	-		PP_1908	0.85	+0.9
2,153,799	-		PP_1908	0.85	+1.0
2,153,799	-		PP_1908	0.85	+0.7
2,154,041	+				+1.0
2,154,042	-				-0.3
2,154,042	-				+0.7
2,154,042	-				-1.3
2,154,048	+				-0.3
2,154,189	+				+0.7
2,154,189	+				+1.8
2,154,323	+		PP_1909	0.27	+0.1
2,154,324	-		PP_1909	0.27	+0.2
2,154,426	+		PP_1909	0.44	+0.7
2,154,460	+		PP_1909	0.49	+1.0
2,154,460	+		PP_1909	0.49	-0.1
2,154,461	-		PP_1909	0.49	+1.2
2,154,461	-		PP_1909	0.49	+0.1
2,154,486	+		PP_1909	0.53	+0.6
2,154,487	-		PP_1909	0.54	+0.1
2,154,487	-		PP_1909	0.54	+0.1
2,154,518	-		PP_1909	0.59	+1.8
2,154,539	-		PP_1909	0.62	-0.9
2,154,539	-		PP_1909	0.62	-0.9
2,154,643	+		PP_1909	0.79	+0.5
2,154,721	+				+0.7
2,154,738	+				+0.6