Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1488 and PP_1489 are separated by 5 nucleotides PP_1489 and PP_1490 overlap by 4 nucleotides
PP_1488: PP_1488 - Methyl-accepting chemotaxis transducer, at 1,691,904 to 1,693,526
_1488
PP_1489: PP_1489 - CheW domain protein, at 1,693,532 to 1,694,038
_1489
PP_1490: PP_1490 - Probable biofilm formation methyltransferase WspC, at 1,694,035 to 1,695,309
_1490
Position (kb)
1693
1694
1695 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1692.540 kb on - strand, within PP_1488 at 1692.561 kb on - strand, within PP_1488 at 1693.027 kb on + strand, within PP_1488 at 1693.104 kb on + strand, within PP_1488 at 1693.105 kb on - strand, within PP_1488 at 1693.173 kb on + strand, within PP_1488 at 1693.174 kb on - strand at 1693.174 kb on - strand, within PP_1488 at 1693.174 kb on - strand, within PP_1488 at 1693.174 kb on - strand, within PP_1488 at 1693.339 kb on + strand, within PP_1488 at 1693.339 kb on + strand, within PP_1488 at 1693.340 kb on - strand at 1693.340 kb on - strand, within PP_1488 at 1693.340 kb on - strand, within PP_1488 at 1693.340 kb on - strand, within PP_1488 at 1693.340 kb on - strand, within PP_1488 at 1693.458 kb on + strand at 1693.458 kb on + strand at 1693.459 kb on - strand at 1693.459 kb on - strand at 1693.459 kb on - strand at 1693.459 kb on - strand at 1693.587 kb on - strand, within PP_1489 at 1693.916 kb on + strand, within PP_1489 at 1693.917 kb on - strand, within PP_1489 at 1694.007 kb on - strand at 1694.007 kb on - strand at 1694.032 kb on + strand at 1694.032 kb on + strand at 1694.032 kb on + strand at 1694.032 kb on + strand at 1694.032 kb on + strand at 1694.032 kb on + strand at 1694.033 kb on - strand at 1694.033 kb on - strand at 1694.033 kb on - strand at 1694.033 kb on - strand at 1694.073 kb on + strand at 1694.167 kb on + strand, within PP_1490 at 1694.167 kb on + strand, within PP_1490 at 1694.168 kb on - strand, within PP_1490 at 1694.366 kb on - strand, within PP_1490 at 1694.366 kb on - strand, within PP_1490 at 1694.471 kb on + strand, within PP_1490 at 1694.471 kb on + strand, within PP_1490 at 1694.471 kb on + strand, within PP_1490 at 1694.471 kb on + strand, within PP_1490 at 1694.472 kb on - strand, within PP_1490 at 1694.472 kb on - strand, within PP_1490 at 1694.474 kb on - strand, within PP_1490 at 1694.522 kb on - strand, within PP_1490 at 1694.632 kb on + strand, within PP_1490 at 1694.632 kb on + strand, within PP_1490 at 1694.633 kb on - strand, within PP_1490 at 1694.633 kb on - strand, within PP_1490 at 1694.665 kb on + strand, within PP_1490 at 1694.665 kb on + strand at 1694.666 kb on - strand, within PP_1490 at 1694.666 kb on - strand, within PP_1490 at 1694.676 kb on - strand, within PP_1490 at 1694.676 kb on - strand, within PP_1490 at 1694.812 kb on + strand, within PP_1490 at 1694.813 kb on - strand, within PP_1490 at 1694.813 kb on - strand, within PP_1490
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 1,692,540 - PP_1488 0.39 -0.2 1,692,561 - PP_1488 0.40 -0.1 1,693,027 + PP_1488 0.69 +0.2 1,693,104 + PP_1488 0.74 +0.4 1,693,105 - PP_1488 0.74 -0.3 1,693,173 + PP_1488 0.78 +0.2 1,693,174 - -0.4 1,693,174 - PP_1488 0.78 +0.4 1,693,174 - PP_1488 0.78 -1.1 1,693,174 - PP_1488 0.78 -0.6 1,693,339 + PP_1488 0.88 +0.3 1,693,339 + PP_1488 0.88 -0.0 1,693,340 - +1.9 1,693,340 - PP_1488 0.88 +0.3 1,693,340 - PP_1488 0.88 -0.6 1,693,340 - PP_1488 0.88 +0.7 1,693,340 - PP_1488 0.88 +2.0 1,693,458 + -0.3 1,693,458 + -0.6 1,693,459 - +0.6 1,693,459 - +0.2 1,693,459 - +0.9 1,693,459 - +0.6 1,693,587 - PP_1489 0.11 -0.9 1,693,916 + PP_1489 0.76 -1.3 1,693,917 - PP_1489 0.76 +0.3 1,694,007 - -0.5 1,694,007 - -0.9 1,694,032 + +0.2 1,694,032 + -1.4 1,694,032 + +0.5 1,694,032 + +0.2 1,694,032 + -0.6 1,694,032 + -0.5 1,694,033 - +1.9 1,694,033 - -0.3 1,694,033 - +1.5 1,694,033 - -0.3 1,694,073 + -1.2 1,694,167 + PP_1490 0.10 +0.2 1,694,167 + PP_1490 0.10 -0.3 1,694,168 - PP_1490 0.10 -0.2 1,694,366 - PP_1490 0.26 +0.7 1,694,366 - PP_1490 0.26 +0.7 1,694,471 + PP_1490 0.34 -2.0 1,694,471 + PP_1490 0.34 -0.1 1,694,471 + PP_1490 0.34 -0.3 1,694,471 + PP_1490 0.34 +0.1 1,694,472 - PP_1490 0.34 +0.8 1,694,472 - PP_1490 0.34 +0.5 1,694,474 - PP_1490 0.34 +1.1 1,694,522 - PP_1490 0.38 +0.7 1,694,632 + PP_1490 0.47 +0.5 1,694,632 + PP_1490 0.47 -0.5 1,694,633 - PP_1490 0.47 +1.1 1,694,633 - PP_1490 0.47 -1.1 1,694,665 + PP_1490 0.49 +0.8 1,694,665 + +0.3 1,694,666 - PP_1490 0.49 -0.0 1,694,666 - PP_1490 0.49 +0.9 1,694,676 - PP_1490 0.50 -1.4 1,694,676 - PP_1490 0.50 -0.1 1,694,812 + PP_1490 0.61 +0.6 1,694,813 - PP_1490 0.61 -0.3 1,694,813 - PP_1490 0.61 +0.4
Or see this region's nucleotide sequence