Strain Fitness in Pseudomonas putida KT2440 around PP_1386

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
1,580,417	+		PP_1385	0.69	-0.5
1,580,425	+		PP_1385	0.69	-2.0
1,580,425	+		PP_1385	0.69	+0.9
1,580,594	-		PP_1385	0.75	-1.8
1,580,594	-		PP_1385	0.75	-1.2
1,580,652	+		PP_1385	0.76	-1.5
1,580,652	+		PP_1385	0.76	-2.0
1,580,814	+		PP_1385	0.82	-0.7
1,580,815	-		PP_1385	0.82	-2.1
1,580,841	+		PP_1385	0.82	-2.7
1,580,842	-		PP_1385	0.82	-1.7
1,580,842	-		PP_1385	0.82	-2.0
1,580,852	+		PP_1385	0.83	-2.5
1,580,853	-		PP_1385	0.83	-0.1
1,580,881	+		PP_1385	0.84	-0.7
1,580,881	+		PP_1385	0.84	-3.0
1,580,882	-		PP_1385	0.84	-1.3
1,580,925	+		PP_1385	0.85	-1.7
1,580,926	-		PP_1385	0.85	-1.9
1,580,926	-		PP_1385	0.85	+0.4
1,580,926	-		PP_1385	0.85	-2.0
1,580,926	-		PP_1385	0.85	-1.6
1,580,927	+		PP_1385	0.85	-2.6
1,580,927	+		PP_1385	0.85	-1.0
1,580,927	+		PP_1385	0.85	-1.7
1,580,927	+		PP_1385	0.85	-3.1
1,580,927	+		PP_1385	0.85	+0.4
1,580,928	-		PP_1385	0.85	-2.6
1,580,928	-		PP_1385	0.85	-2.5
1,580,928	-		PP_1385	0.85	-2.3
1,580,928	-		PP_1385	0.85	-1.8
1,581,076	+		PP_1385	0.90	-1.2
1,581,083	-				-2.2
1,581,167	+				-0.3
1,581,167	+				-0.7
1,581,167	+				-1.3
1,581,168	-				-1.3
1,581,168	-				-2.1
1,581,168	-				-0.2
1,581,168	-				-1.0
1,581,168	-				-3.4
1,581,401	+				-1.1
1,581,506	+				-1.4
1,581,968	+		PP_1386	0.49	-0.3
1,581,968	+		PP_1386	0.49	-1.1
1,581,973	-		PP_1386	0.50	-1.5
1,581,973	-		PP_1386	0.50	-1.1
1,582,088	+		PP_1386	0.60	+0.3
1,582,089	-		PP_1386	0.60	-0.9
1,582,157	+		PP_1386	0.66	-1.6
1,582,158	-		PP_1386	0.66	-0.6
1,582,158	-		PP_1386	0.66	-4.0
1,582,199	+				+0.3
1,582,199	+		PP_1386	0.69	-1.1
1,582,199	+		PP_1386	0.69	+0.1
1,582,200	-		PP_1386	0.69	-2.9
1,582,200	-		PP_1386	0.69	-2.1
1,582,222	-		PP_1386	0.71	-1.9
1,582,222	-		PP_1386	0.71	-0.7
1,582,222	-		PP_1386	0.71	+0.4
1,582,263	-		PP_1386	0.75	+0.9
1,582,263	-		PP_1386	0.75	-1.1
1,582,283	+		PP_1386	0.76	-1.8
1,582,283	+		PP_1386	0.76	-0.7
1,582,283	+		PP_1386	0.76	-1.2
1,582,284	-		PP_1386	0.77	-1.4
1,582,284	-		PP_1386	0.77	-3.4
1,582,376	+		PP_1386	0.85	-0.6
1,582,377	-		PP_1386	0.85	-2.0
1,582,595	+				-0.9
1,582,596	-				-0.5
1,582,628	-				-0.2
1,582,663	+				-3.1
1,582,707	-				+0.4
1,582,725	+				-0.9
1,582,725	+				-1.6
1,582,725	+				-2.3
1,582,726	-				-0.9
1,582,726	-				-1.1
1,582,726	-				+0.5
1,582,805	+				-2.4
1,582,805	+				-1.5
1,582,805	+				-0.2
1,582,806	-				+1.5
1,582,806	-				+0.2
1,582,884	+		PP_1387	0.11	-1.1
1,582,884	+		PP_1387	0.11	-0.6
1,582,885	-		PP_1387	0.12	+2.4
1,583,319	+		PP_1387	0.80	-0.2
1,583,319	+		PP_1387	0.80	+0.7
1,583,320	-		PP_1387	0.80	-0.4
1,583,348	-		PP_1387	0.85	+0.7
1,583,487	-				+0.0
1,583,487	-				+0.3
1,583,494	+				-0.0
1,583,495	-				-2.3
1,583,495	-				+0.3
1,583,495	-				+1.1
1,583,498	-				+0.1
1,583,498	-				-0.8