Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1385 and PP_1386 are separated by 3 nucleotides PP_1386 and PP_1387 are separated by 257 nucleotides
PP_1385: PP_1385 - Probable efflux pump membrane transporter TtgB, at 1,578,244 to 1,581,396
_1385
PP_1386: PP_1386 - Probable efflux pump periplasmic linker TtgA, at 1,581,400 to 1,582,554
_1386
PP_1387: PP_1387 - Probable HTH-type transcriptional regulator TtgR, at 1,582,812 to 1,583,444
_1387
Position (kb)
1581
1582
1583 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1580.417 kb on + strand, within PP_1385 at 1580.425 kb on + strand, within PP_1385 at 1580.425 kb on + strand, within PP_1385 at 1580.594 kb on - strand, within PP_1385 at 1580.594 kb on - strand, within PP_1385 at 1580.652 kb on + strand, within PP_1385 at 1580.652 kb on + strand, within PP_1385 at 1580.814 kb on + strand, within PP_1385 at 1580.815 kb on - strand, within PP_1385 at 1580.841 kb on + strand, within PP_1385 at 1580.842 kb on - strand, within PP_1385 at 1580.842 kb on - strand, within PP_1385 at 1580.852 kb on + strand, within PP_1385 at 1580.853 kb on - strand, within PP_1385 at 1580.881 kb on + strand, within PP_1385 at 1580.881 kb on + strand, within PP_1385 at 1580.882 kb on - strand, within PP_1385 at 1580.925 kb on + strand, within PP_1385 at 1580.926 kb on - strand, within PP_1385 at 1580.926 kb on - strand, within PP_1385 at 1580.926 kb on - strand, within PP_1385 at 1580.926 kb on - strand, within PP_1385 at 1580.927 kb on + strand, within PP_1385 at 1580.927 kb on + strand, within PP_1385 at 1580.927 kb on + strand, within PP_1385 at 1580.927 kb on + strand, within PP_1385 at 1580.927 kb on + strand, within PP_1385 at 1580.928 kb on - strand, within PP_1385 at 1580.928 kb on - strand, within PP_1385 at 1580.928 kb on - strand, within PP_1385 at 1580.928 kb on - strand, within PP_1385 at 1581.076 kb on + strand, within PP_1385 at 1581.083 kb on - strand at 1581.167 kb on + strand at 1581.167 kb on + strand at 1581.167 kb on + strand at 1581.168 kb on - strand at 1581.168 kb on - strand at 1581.168 kb on - strand at 1581.168 kb on - strand at 1581.168 kb on - strand at 1581.401 kb on + strand at 1581.506 kb on + strand at 1581.968 kb on + strand, within PP_1386 at 1581.968 kb on + strand, within PP_1386 at 1581.973 kb on - strand, within PP_1386 at 1581.973 kb on - strand, within PP_1386 at 1582.088 kb on + strand, within PP_1386 at 1582.089 kb on - strand, within PP_1386 at 1582.157 kb on + strand, within PP_1386 at 1582.158 kb on - strand, within PP_1386 at 1582.158 kb on - strand, within PP_1386 at 1582.199 kb on + strand at 1582.199 kb on + strand, within PP_1386 at 1582.199 kb on + strand, within PP_1386 at 1582.200 kb on - strand, within PP_1386 at 1582.200 kb on - strand, within PP_1386 at 1582.222 kb on - strand, within PP_1386 at 1582.222 kb on - strand, within PP_1386 at 1582.222 kb on - strand, within PP_1386 at 1582.263 kb on - strand, within PP_1386 at 1582.263 kb on - strand, within PP_1386 at 1582.283 kb on + strand, within PP_1386 at 1582.283 kb on + strand, within PP_1386 at 1582.283 kb on + strand, within PP_1386 at 1582.284 kb on - strand, within PP_1386 at 1582.284 kb on - strand, within PP_1386 at 1582.376 kb on + strand, within PP_1386 at 1582.377 kb on - strand, within PP_1386 at 1582.595 kb on + strand at 1582.596 kb on - strand at 1582.628 kb on - strand at 1582.663 kb on + strand at 1582.707 kb on - strand at 1582.725 kb on + strand at 1582.725 kb on + strand at 1582.725 kb on + strand at 1582.726 kb on - strand at 1582.726 kb on - strand at 1582.726 kb on - strand at 1582.805 kb on + strand at 1582.805 kb on + strand at 1582.805 kb on + strand at 1582.806 kb on - strand at 1582.806 kb on - strand at 1582.884 kb on + strand, within PP_1387 at 1582.884 kb on + strand, within PP_1387 at 1582.885 kb on - strand, within PP_1387 at 1583.319 kb on + strand, within PP_1387 at 1583.319 kb on + strand, within PP_1387 at 1583.320 kb on - strand, within PP_1387 at 1583.348 kb on - strand, within PP_1387 at 1583.487 kb on - strand at 1583.487 kb on - strand at 1583.494 kb on + strand at 1583.495 kb on - strand at 1583.495 kb on - strand at 1583.495 kb on - strand at 1583.498 kb on - strand at 1583.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 1,580,417 + PP_1385 0.69 -0.5 1,580,425 + PP_1385 0.69 -2.0 1,580,425 + PP_1385 0.69 +0.9 1,580,594 - PP_1385 0.75 -1.8 1,580,594 - PP_1385 0.75 -1.2 1,580,652 + PP_1385 0.76 -1.5 1,580,652 + PP_1385 0.76 -2.0 1,580,814 + PP_1385 0.82 -0.7 1,580,815 - PP_1385 0.82 -2.1 1,580,841 + PP_1385 0.82 -2.7 1,580,842 - PP_1385 0.82 -1.7 1,580,842 - PP_1385 0.82 -2.0 1,580,852 + PP_1385 0.83 -2.5 1,580,853 - PP_1385 0.83 -0.1 1,580,881 + PP_1385 0.84 -0.7 1,580,881 + PP_1385 0.84 -3.0 1,580,882 - PP_1385 0.84 -1.3 1,580,925 + PP_1385 0.85 -1.7 1,580,926 - PP_1385 0.85 -1.9 1,580,926 - PP_1385 0.85 +0.4 1,580,926 - PP_1385 0.85 -2.0 1,580,926 - PP_1385 0.85 -1.6 1,580,927 + PP_1385 0.85 -2.6 1,580,927 + PP_1385 0.85 -1.0 1,580,927 + PP_1385 0.85 -1.7 1,580,927 + PP_1385 0.85 -3.1 1,580,927 + PP_1385 0.85 +0.4 1,580,928 - PP_1385 0.85 -2.6 1,580,928 - PP_1385 0.85 -2.5 1,580,928 - PP_1385 0.85 -2.3 1,580,928 - PP_1385 0.85 -1.8 1,581,076 + PP_1385 0.90 -1.2 1,581,083 - -2.2 1,581,167 + -0.3 1,581,167 + -0.7 1,581,167 + -1.3 1,581,168 - -1.3 1,581,168 - -2.1 1,581,168 - -0.2 1,581,168 - -1.0 1,581,168 - -3.4 1,581,401 + -1.1 1,581,506 + -1.4 1,581,968 + PP_1386 0.49 -0.3 1,581,968 + PP_1386 0.49 -1.1 1,581,973 - PP_1386 0.50 -1.5 1,581,973 - PP_1386 0.50 -1.1 1,582,088 + PP_1386 0.60 +0.3 1,582,089 - PP_1386 0.60 -0.9 1,582,157 + PP_1386 0.66 -1.6 1,582,158 - PP_1386 0.66 -0.6 1,582,158 - PP_1386 0.66 -4.0 1,582,199 + +0.3 1,582,199 + PP_1386 0.69 -1.1 1,582,199 + PP_1386 0.69 +0.1 1,582,200 - PP_1386 0.69 -2.9 1,582,200 - PP_1386 0.69 -2.1 1,582,222 - PP_1386 0.71 -1.9 1,582,222 - PP_1386 0.71 -0.7 1,582,222 - PP_1386 0.71 +0.4 1,582,263 - PP_1386 0.75 +0.9 1,582,263 - PP_1386 0.75 -1.1 1,582,283 + PP_1386 0.76 -1.8 1,582,283 + PP_1386 0.76 -0.7 1,582,283 + PP_1386 0.76 -1.2 1,582,284 - PP_1386 0.77 -1.4 1,582,284 - PP_1386 0.77 -3.4 1,582,376 + PP_1386 0.85 -0.6 1,582,377 - PP_1386 0.85 -2.0 1,582,595 + -0.9 1,582,596 - -0.5 1,582,628 - -0.2 1,582,663 + -3.1 1,582,707 - +0.4 1,582,725 + -0.9 1,582,725 + -1.6 1,582,725 + -2.3 1,582,726 - -0.9 1,582,726 - -1.1 1,582,726 - +0.5 1,582,805 + -2.4 1,582,805 + -1.5 1,582,805 + -0.2 1,582,806 - +1.5 1,582,806 - +0.2 1,582,884 + PP_1387 0.11 -1.1 1,582,884 + PP_1387 0.11 -0.6 1,582,885 - PP_1387 0.12 +2.4 1,583,319 + PP_1387 0.80 -0.2 1,583,319 + PP_1387 0.80 +0.7 1,583,320 - PP_1387 0.80 -0.4 1,583,348 - PP_1387 0.85 +0.7 1,583,487 - +0.0 1,583,487 - +0.3 1,583,494 + -0.0 1,583,495 - -2.3 1,583,495 - +0.3 1,583,495 - +1.1 1,583,498 - +0.1 1,583,498 - -0.8
Or see this region's nucleotide sequence