Strain Fitness in Pseudomonas putida KT2440 around PP_1307

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
1,494,044	+		PP_1306	0.64	+0.8
1,494,045	-		PP_1306	0.64	-1.3
1,494,045	-		PP_1306	0.64	-0.2
1,494,045	-		PP_1306	0.64	-0.5
1,494,045	-		PP_1306	0.64	-1.2
1,494,048	+		PP_1306	0.64	+0.7
1,494,049	-		PP_1306	0.64	+0.9
1,494,049	-		PP_1306	0.64	+0.3
1,494,049	-		PP_1306	0.64	+1.3
1,494,049	-		PP_1306	0.64	-0.8
1,494,223	+		PP_1306	0.72	+0.8
1,494,223	+		PP_1306	0.72	+0.2
1,494,224	-		PP_1306	0.72	+1.1
1,494,224	-		PP_1306	0.72	+0.9
1,494,287	-		PP_1306	0.74	-0.1
1,494,287	-		PP_1306	0.74	+0.8
1,494,293	+		PP_1306	0.75	+1.2
1,494,340	+		PP_1306	0.77	-0.4
1,494,413	+		PP_1306	0.80	+0.2
1,494,413	+		PP_1306	0.80	+0.2
1,494,413	+		PP_1306	0.80	+1.0
1,494,414	-		PP_1306	0.80	+0.3
1,494,464	+		PP_1306	0.82	-0.2
1,494,465	-		PP_1306	0.82	-0.5
1,494,465	-		PP_1306	0.82	-1.1
1,494,572	-		PP_1306	0.87	+0.3
1,494,581	-		PP_1306	0.87	-0.1
1,494,583	-		PP_1306	0.87	+0.3
1,494,614	+		PP_1306	0.89	+0.1
1,494,614	+		PP_1306	0.89	+0.3
1,494,614	+		PP_1306	0.89	+0.8
1,494,627	-		PP_1306	0.89	+1.0
1,494,678	+				-0.4
1,494,679	-				+0.5
1,494,733	+				+0.9
1,494,793	-				-0.5
1,494,793	-				+0.4
1,494,813	-				+0.8
1,494,813	-				-0.0
1,494,830	+				-1.8
1,494,831	-				-0.3
1,494,833	+				-1.4
1,494,833	+				-0.3
1,494,834	-				+0.7
1,494,837	+				-0.5
1,494,837	+				+0.9
1,494,837	+				+1.5
1,494,855	-				-0.0
1,494,871	+				-0.8
1,494,872	-				+0.9
1,494,887	-				+0.6
1,494,890	+				+0.8
1,494,890	+				+1.1
1,494,890	+				-0.8
1,494,890	+				+0.8
1,494,932	+				+0.8
1,494,933	-				-0.8
1,494,970	+				-0.9
1,494,970	+				-0.2
1,494,971	-				+0.5
1,495,032	+		PP_1307	0.14	+0.5
1,495,032	+		PP_1307	0.14	+0.1
1,495,314	-		PP_1307	0.73	-0.4
1,495,342	+		PP_1307	0.79	+0.2
1,495,342	+		PP_1307	0.79	+0.2
1,495,342	+		PP_1307	0.79	+0.1
1,495,469	+				-0.3
1,495,470	-				+0.8
1,495,496	+				+0.2
1,495,497	-				-0.8
1,495,497	-				+2.5
1,495,497	-				+0.7
1,495,507	+				-0.6
1,495,539	+				-1.0
1,495,539	+				-0.2
1,495,539	+				+0.3
1,495,540	-				+0.1
1,495,540	-				-0.6
1,495,540	-				+1.6
1,495,545	+				+0.9
1,495,546	-				-0.3
1,495,626	+				-0.3
1,495,626	+				+0.3
1,495,626	+				+0.5
1,495,627	-				+1.5
1,495,627	-				-0.6
1,495,627	-				-0.7
1,495,669	-				+0.5
1,495,669	-				-1.1
1,495,679	+				-0.9
1,495,683	+				-2.6
1,495,683	+				+1.0
1,495,683	+				+0.1
1,495,683	+				-0.6
1,495,684	-				+0.1
1,495,684	-				-0.5
1,495,684	-				+0.1
1,495,684	-				+0.1
1,495,704	+		PP_1308	0.11	+0.9
1,495,746	+		PP_1308	0.15	+0.3
1,495,747	-		PP_1308	0.15	-0.2
1,495,850	+		PP_1308	0.23	+0.5
1,495,850	+		PP_1308	0.23	+0.1
1,495,850	+		PP_1308	0.23	+1.9
1,495,911	+		PP_1308	0.28	-2.5
1,495,920	-		PP_1308	0.29	+0.8
1,495,920	-		PP_1308	0.29	-1.4
1,495,943	+		PP_1308	0.31	-0.3
1,496,034	+		PP_1308	0.39	-0.0
1,496,034	+		PP_1308	0.39	+1.0
1,496,141	+		PP_1308	0.48	+0.3
1,496,141	+		PP_1308	0.48	+0.5
1,496,141	+		PP_1308	0.48	+0.4
1,496,142	-		PP_1308	0.48	+0.3
1,496,142	-		PP_1308	0.48	-1.6
1,496,148	+		PP_1308	0.48	-0.9
1,496,225	+		PP_1308	0.55	-3.3
1,496,226	-		PP_1308	0.55	+0.4
1,496,226	-				+0.1
1,496,294	+		PP_1308	0.60	+0.4
1,496,294	+		PP_1308	0.60	+0.4
1,496,294	+		PP_1308	0.60	-0.6