Strain Fitness in Pseudomonas putida KT2440 around PP_1292

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
1,478,059	+				+0.3
1,478,060	-		PP_1291	0.51	+1.7
1,478,060	-		PP_1291	0.51	+0.7
1,478,418	+		PP_1291	0.77	-0.0
1,478,418	+		PP_1291	0.77	-1.9
1,478,418	+		PP_1291	0.77	+0.3
1,478,418	+		PP_1291	0.77	+0.5
1,478,418	+		PP_1291	0.77	-0.7
1,478,418	+		PP_1291	0.77	-0.3
1,478,419	-		PP_1291	0.77	-1.4
1,478,419	-		PP_1291	0.77	-1.1
1,478,460	+		PP_1291	0.80	-1.4
1,478,460	+		PP_1291	0.80	-0.3
1,478,461	-		PP_1291	0.80	+3.5
1,478,461	-		PP_1291	0.80	+0.5
1,478,461	-		PP_1291	0.80	+0.6
1,478,475	-		PP_1291	0.81	+0.3
1,478,475	-		PP_1291	0.81	+0.2
1,478,475	-		PP_1291	0.81	-0.2
1,478,611	-				+1.0
1,478,640	+				+0.2
1,478,640	+				-0.0
1,478,739	+				-2.2
1,478,739	+				-1.3
1,478,762	-				+0.1
1,478,875	+				-0.1
1,478,875	+				-0.9
1,478,875	+				-0.7
1,478,876	-				+0.8
1,478,876	-				-0.6
1,478,876	-				-0.2
1,478,876	-				-0.6
1,478,876	-				+0.1
1,478,904	+				+0.6
1,478,904	+				+0.0
1,478,905	-				-0.6
1,478,905	-				+0.7
1,479,306	+		PP_1292	0.78	+0.8
1,479,306	+		PP_1292	0.78	+0.2
1,479,306	+		PP_1292	0.78	-1.7
1,479,306	+		PP_1292	0.78	+0.5
1,479,306	+		PP_1292	0.78	-0.5
1,479,306	+		PP_1292	0.78	+0.6
1,479,306	+		PP_1292	0.78	+1.5
1,479,307	-		PP_1292	0.79	+0.8
1,479,307	-		PP_1292	0.79	+0.3
1,479,307	-		PP_1292	0.79	+0.4
1,479,330	-		PP_1292	0.83	-0.7
1,479,335	+		PP_1292	0.85	-2.9
1,479,335	+		PP_1292	0.85	-0.3
1,479,336	-		PP_1292	0.85	+0.7
1,479,336	-		PP_1292	0.85	+0.5
1,479,336	-		PP_1292	0.85	-0.0
1,479,336	-		PP_1292	0.85	-0.7
1,479,336	-		PP_1292	0.85	-0.0
1,479,426	-				+0.3
1,479,426	-				+0.9
1,479,533	+		PP_1293	0.52	-0.0
1,479,534	-		PP_1293	0.52	+0.0
1,479,758	-		PP_1294	0.23	+1.1
1,480,035	+		PP_1294	0.85	+0.6
1,480,035	+		PP_1294	0.85	+0.1
1,480,036	-		PP_1294	0.85	+0.2
1,480,036	-		PP_1294	0.85	-0.2
1,480,036	-		PP_1294	0.85	+0.4
1,480,036	-		PP_1294	0.85	+0.2
1,480,100	-				+0.5
1,480,100	-				-0.6
1,480,125	-				+1.1
1,480,203	-				+0.8
1,480,224	+				-0.3
1,480,393	-				-0.3