Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1275 and PP_1276 are separated by 163 nucleotides PP_1276 and PP_1277 are separated by 39 nucleotides PP_1277 and PP_1278 are separated by 32 nucleotides PP_1278 and PP_1279 are separated by 20 nucleotides
PP_1275: PP_1275 - conserved protein of unknown function, at 1,457,014 to 1,457,478
_1275
PP_1276: PP_1276 - conserved protein of unknown function, at 1,457,642 to 1,458,100
_1276
PP_1277: PP_1277 - mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase, at 1,458,140 to 1,459,597
_1277
PP_1278: PP_1278 - Alginate biosynthesis protein AlgF, at 1,459,630 to 1,460,277
_1278
PP_1279: PP_1279 - Probable alginate O-acetylase AlgJ, at 1,460,298 to 1,461,464
_1279
Position (kb)
1458
1459
1460 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1457.162 kb on + strand, within PP_1275 at 1457.162 kb on + strand, within PP_1275 at 1457.162 kb on + strand, within PP_1275 at 1457.163 kb on - strand, within PP_1275 at 1457.202 kb on - strand, within PP_1275 at 1457.260 kb on + strand, within PP_1275 at 1457.300 kb on + strand, within PP_1275 at 1457.300 kb on + strand, within PP_1275 at 1457.300 kb on + strand, within PP_1275 at 1457.301 kb on - strand, within PP_1275 at 1457.512 kb on + strand at 1457.575 kb on - strand at 1457.575 kb on - strand at 1457.601 kb on + strand at 1457.805 kb on - strand, within PP_1276 at 1457.810 kb on + strand, within PP_1276 at 1457.810 kb on + strand, within PP_1276 at 1457.811 kb on - strand, within PP_1276 at 1457.811 kb on - strand, within PP_1276 at 1457.811 kb on - strand, within PP_1276 at 1457.811 kb on - strand, within PP_1276 at 1457.840 kb on + strand at 1457.936 kb on + strand, within PP_1276 at 1457.937 kb on - strand, within PP_1276 at 1457.937 kb on - strand, within PP_1276 at 1458.074 kb on + strand at 1458.074 kb on + strand at 1458.074 kb on + strand at 1458.074 kb on + strand at 1458.075 kb on - strand at 1458.075 kb on - strand at 1458.075 kb on - strand at 1458.075 kb on - strand at 1458.075 kb on - strand at 1458.099 kb on - strand at 1458.099 kb on - strand at 1458.141 kb on + strand at 1458.141 kb on + strand at 1458.142 kb on - strand at 1458.198 kb on + strand at 1458.198 kb on + strand at 1458.199 kb on - strand at 1458.199 kb on - strand at 1458.237 kb on + strand at 1458.237 kb on + strand at 1458.238 kb on - strand at 1458.318 kb on + strand, within PP_1277 at 1458.318 kb on + strand, within PP_1277 at 1458.319 kb on - strand, within PP_1277 at 1458.496 kb on - strand, within PP_1277 at 1458.513 kb on + strand, within PP_1277 at 1458.514 kb on - strand, within PP_1277 at 1458.514 kb on - strand, within PP_1277 at 1458.514 kb on - strand, within PP_1277 at 1458.782 kb on + strand, within PP_1277 at 1458.783 kb on - strand, within PP_1277 at 1458.783 kb on - strand, within PP_1277 at 1458.847 kb on - strand, within PP_1277 at 1458.899 kb on + strand, within PP_1277 at 1458.900 kb on - strand, within PP_1277 at 1458.900 kb on - strand at 1458.900 kb on - strand, within PP_1277 at 1458.936 kb on - strand, within PP_1277 at 1458.948 kb on + strand, within PP_1277 at 1458.948 kb on + strand, within PP_1277 at 1458.949 kb on - strand, within PP_1277 at 1459.009 kb on + strand, within PP_1277 at 1459.009 kb on + strand, within PP_1277 at 1459.009 kb on + strand, within PP_1277 at 1459.010 kb on - strand, within PP_1277 at 1459.010 kb on - strand, within PP_1277 at 1459.010 kb on - strand, within PP_1277 at 1459.027 kb on - strand, within PP_1277 at 1459.027 kb on - strand, within PP_1277 at 1459.137 kb on + strand, within PP_1277 at 1459.429 kb on + strand, within PP_1277 at 1459.429 kb on + strand, within PP_1277 at 1459.430 kb on - strand, within PP_1277 at 1459.495 kb on + strand at 1459.495 kb on + strand at 1459.495 kb on + strand at 1459.496 kb on - strand at 1459.496 kb on - strand at 1459.496 kb on - strand at 1459.583 kb on + strand at 1459.608 kb on + strand at 1459.608 kb on + strand at 1459.609 kb on - strand at 1459.609 kb on - strand at 1459.638 kb on + strand at 1459.690 kb on + strand at 1459.691 kb on - strand at 1459.694 kb on + strand at 1459.694 kb on + strand at 1459.763 kb on + strand, within PP_1278 at 1459.764 kb on - strand, within PP_1278 at 1459.764 kb on - strand, within PP_1278 at 1459.764 kb on - strand, within PP_1278 at 1459.976 kb on + strand, within PP_1278 at 1459.976 kb on + strand, within PP_1278 at 1459.976 kb on + strand, within PP_1278 at 1459.977 kb on - strand, within PP_1278 at 1459.979 kb on + strand, within PP_1278 at 1459.979 kb on + strand, within PP_1278 at 1459.980 kb on - strand, within PP_1278 at 1459.980 kb on - strand, within PP_1278 at 1460.033 kb on + strand, within PP_1278 at 1460.033 kb on + strand, within PP_1278 at 1460.034 kb on - strand, within PP_1278 at 1460.138 kb on + strand, within PP_1278 at 1460.138 kb on + strand, within PP_1278 at 1460.139 kb on - strand, within PP_1278 at 1460.146 kb on + strand, within PP_1278 at 1460.147 kb on - strand, within PP_1278 at 1460.147 kb on - strand, within PP_1278 at 1460.180 kb on + strand, within PP_1278 at 1460.181 kb on - strand, within PP_1278 at 1460.181 kb on - strand, within PP_1278 at 1460.292 kb on + strand at 1460.292 kb on + strand at 1460.414 kb on - strand at 1460.479 kb on + strand, within PP_1279 at 1460.521 kb on + strand, within PP_1279 at 1460.522 kb on - strand, within PP_1279 at 1460.590 kb on + strand, within PP_1279 at 1460.591 kb on - strand, within PP_1279 at 1460.591 kb on - strand, within PP_1279
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 1,457,162 + PP_1275 0.32 -1.0 1,457,162 + PP_1275 0.32 -0.0 1,457,162 + PP_1275 0.32 +0.0 1,457,163 - PP_1275 0.32 -0.7 1,457,202 - PP_1275 0.40 -0.7 1,457,260 + PP_1275 0.53 -0.5 1,457,300 + PP_1275 0.62 -0.3 1,457,300 + PP_1275 0.62 -0.1 1,457,300 + PP_1275 0.62 -1.0 1,457,301 - PP_1275 0.62 -0.0 1,457,512 + +0.4 1,457,575 - +0.6 1,457,575 - +0.9 1,457,601 + +1.0 1,457,805 - PP_1276 0.36 +0.0 1,457,810 + PP_1276 0.37 +1.1 1,457,810 + PP_1276 0.37 -0.7 1,457,811 - PP_1276 0.37 -0.0 1,457,811 - PP_1276 0.37 -0.6 1,457,811 - PP_1276 0.37 -0.0 1,457,811 - PP_1276 0.37 +1.0 1,457,840 + +1.3 1,457,936 + PP_1276 0.64 -0.2 1,457,937 - PP_1276 0.64 +1.2 1,457,937 - PP_1276 0.64 -0.8 1,458,074 + +1.0 1,458,074 + -1.4 1,458,074 + +0.8 1,458,074 + -0.4 1,458,075 - -0.3 1,458,075 - +2.2 1,458,075 - +0.6 1,458,075 - +1.6 1,458,075 - +0.1 1,458,099 - +0.0 1,458,099 - -0.5 1,458,141 + +0.4 1,458,141 + -0.1 1,458,142 - +0.3 1,458,198 + +0.1 1,458,198 + +0.1 1,458,199 - -1.5 1,458,199 - +0.7 1,458,237 + +1.0 1,458,237 + -0.5 1,458,238 - +0.4 1,458,318 + PP_1277 0.12 +0.8 1,458,318 + PP_1277 0.12 +0.1 1,458,319 - PP_1277 0.12 -0.0 1,458,496 - PP_1277 0.24 +0.1 1,458,513 + PP_1277 0.26 +0.6 1,458,514 - PP_1277 0.26 +0.5 1,458,514 - PP_1277 0.26 +0.6 1,458,514 - PP_1277 0.26 -0.1 1,458,782 + PP_1277 0.44 +1.3 1,458,783 - PP_1277 0.44 +0.9 1,458,783 - PP_1277 0.44 +0.8 1,458,847 - PP_1277 0.48 +0.9 1,458,899 + PP_1277 0.52 +0.1 1,458,900 - PP_1277 0.52 +0.5 1,458,900 - +0.3 1,458,900 - PP_1277 0.52 -0.3 1,458,936 - PP_1277 0.55 +0.1 1,458,948 + PP_1277 0.55 -0.2 1,458,948 + PP_1277 0.55 -0.1 1,458,949 - PP_1277 0.55 +0.2 1,459,009 + PP_1277 0.60 -0.2 1,459,009 + PP_1277 0.60 -2.5 1,459,009 + PP_1277 0.60 +1.1 1,459,010 - PP_1277 0.60 +2.0 1,459,010 - PP_1277 0.60 +0.3 1,459,010 - PP_1277 0.60 +1.3 1,459,027 - PP_1277 0.61 -0.5 1,459,027 - PP_1277 0.61 +0.3 1,459,137 + PP_1277 0.68 +1.2 1,459,429 + PP_1277 0.88 +1.5 1,459,429 + PP_1277 0.88 -0.8 1,459,430 - PP_1277 0.88 +0.2 1,459,495 + -1.1 1,459,495 + -0.3 1,459,495 + +0.6 1,459,496 - +1.3 1,459,496 - -0.2 1,459,496 - +0.4 1,459,583 + -0.5 1,459,608 + +0.1 1,459,608 + +0.3 1,459,609 - -0.5 1,459,609 - +0.7 1,459,638 + +0.2 1,459,690 + -0.3 1,459,691 - -0.6 1,459,694 + +0.3 1,459,694 + -1.8 1,459,763 + PP_1278 0.21 +1.1 1,459,764 - PP_1278 0.21 -0.7 1,459,764 - PP_1278 0.21 -0.9 1,459,764 - PP_1278 0.21 -0.0 1,459,976 + PP_1278 0.53 -0.2 1,459,976 + PP_1278 0.53 -0.4 1,459,976 + PP_1278 0.53 -0.6 1,459,977 - PP_1278 0.54 -0.5 1,459,979 + PP_1278 0.54 -0.1 1,459,979 + PP_1278 0.54 +0.3 1,459,980 - PP_1278 0.54 +0.2 1,459,980 - PP_1278 0.54 -2.2 1,460,033 + PP_1278 0.62 -0.3 1,460,033 + PP_1278 0.62 -0.1 1,460,034 - PP_1278 0.62 +0.0 1,460,138 + PP_1278 0.78 +0.1 1,460,138 + PP_1278 0.78 +0.4 1,460,139 - PP_1278 0.79 +0.8 1,460,146 + PP_1278 0.80 +0.3 1,460,147 - PP_1278 0.80 +0.8 1,460,147 - PP_1278 0.80 +0.6 1,460,180 + PP_1278 0.85 +0.2 1,460,181 - PP_1278 0.85 +0.3 1,460,181 - PP_1278 0.85 -0.6 1,460,292 + -1.1 1,460,292 + -0.9 1,460,414 - -0.4 1,460,479 + PP_1279 0.16 +0.7 1,460,521 + PP_1279 0.19 -1.1 1,460,522 - PP_1279 0.19 +0.5 1,460,590 + PP_1279 0.25 -1.2 1,460,591 - PP_1279 0.25 -0.1 1,460,591 - PP_1279 0.25 +0.5
Or see this region's nucleotide sequence