Strain Fitness in Pseudomonas putida KT2440 around PP_1028

Experiment: 3-methyl-1-butanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.4 vol%
1,172,507	+		PP_1027	0.60	-1.2
1,172,515	+		PP_1027	0.61	+0.1
1,172,516	-		PP_1027	0.61	-1.0
1,172,519	+		PP_1027	0.61	+0.2
1,172,520	-		PP_1027	0.61	+0.7
1,172,743	+		PP_1027	0.78	+0.1
1,172,744	-		PP_1027	0.78	-0.4
1,172,744	-		PP_1027	0.78	+0.5
1,172,744	-		PP_1027	0.78	-0.1
1,172,744	-		PP_1027	0.78	-1.0
1,172,744	-		PP_1027	0.78	-0.7
1,172,751	+		PP_1027	0.78	-0.2
1,172,752	-		PP_1027	0.78	-1.4
1,172,892	+		PP_1027	0.88	-1.2
1,172,892	+		PP_1027	0.88	+0.6
1,172,893	-		PP_1027	0.88	-0.4
1,172,893	-		PP_1027	0.88	-0.5
1,172,893	-		PP_1027	0.88	-0.8
1,173,005	-				+0.2
1,173,064	+				-0.2
1,173,064	+				+0.0
1,173,064	+				+0.8
1,173,065	-				+0.6
1,173,065	-				+0.1
1,173,099	+				-0.1
1,173,315	+		PP_1028	0.19	-0.3
1,173,316	-		PP_1028	0.19	-0.4
1,173,403	+		PP_1028	0.29	-0.7
1,173,403	+		PP_1028	0.29	-1.2
1,173,404	-		PP_1028	0.29	-0.3
1,173,682	+		PP_1028	0.61	-0.4
1,173,946	+				-1.7
1,173,946	+				+1.2
1,173,947	-				-0.5
1,174,063	+				+0.5
1,174,063	+				+0.7
1,174,066	+				-0.9
1,174,066	+				+0.2
1,174,090	+				-0.3
1,174,189	+				-0.5
1,174,189	+				-1.3
1,174,190	-				-0.5
1,174,190	-				-2.8
1,174,219	-		PP_1029	0.13	-0.6
1,174,389	+		PP_1029	0.35	+0.1
1,174,390	-		PP_1029	0.35	+0.4
1,174,390	-		PP_1029	0.35	+0.2
1,174,390	-		PP_1029	0.35	+0.3
1,174,465	+		PP_1029	0.45	-1.4
1,174,466	-		PP_1029	0.45	+0.4
1,174,466	-		PP_1029	0.45	+0.2
1,174,474	+		PP_1029	0.46	-0.2
1,174,585	+		PP_1029	0.61	+1.2
1,174,595	-		PP_1029	0.62	+0.2
1,174,629	-		PP_1029	0.67	-0.2
1,174,629	-		PP_1029	0.67	-0.9
1,174,629	-		PP_1029	0.67	-0.2
1,174,662	+		PP_1029	0.71	-0.2
1,174,663	-		PP_1029	0.71	+1.8
1,174,668	-		PP_1029	0.72	+0.5
1,174,702	+		PP_1029	0.77	-1.7
1,174,703	-		PP_1029	0.77	+0.2
1,174,703	-		PP_1029	0.77	+0.0
1,174,864	+				-0.3