Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0937 and PP_0938 are separated by 82 nucleotides PP_0938 and PP_0939 are separated by 8 nucleotides PP_0939 and PP_0940 are separated by 2 nucleotides
PP_0937: PP_0937 - endoribonuclease G (RNAse G), at 1,078,806 to 1,080,263
_0937
PP_0938: PP_0938 - conserved protein of unknown function, at 1,080,346 to 1,084,167
_0938
PP_0939: PP_0939 - Carbon-nitrogen hydrolase family protein, at 1,084,176 to 1,085,027
_0939
PP_0940: PP_0940 - putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD, at 1,085,030 to 1,086,469
_0940
Position (kb)
1080
1081
1082
1083
1084
1085 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1079.421 kb on + strand, within PP_0937 at 1079.602 kb on - strand, within PP_0937 at 1079.602 kb on - strand, within PP_0937 at 1079.778 kb on - strand, within PP_0937 at 1079.880 kb on - strand, within PP_0937 at 1080.057 kb on + strand, within PP_0937 at 1080.111 kb on + strand, within PP_0937 at 1080.229 kb on - strand at 1080.229 kb on - strand at 1080.229 kb on - strand at 1080.243 kb on + strand at 1080.243 kb on + strand at 1080.243 kb on + strand at 1080.243 kb on + strand at 1080.243 kb on + strand at 1080.244 kb on - strand at 1080.244 kb on - strand at 1080.404 kb on + strand at 1080.404 kb on + strand at 1080.404 kb on + strand at 1080.404 kb on + strand at 1080.404 kb on + strand at 1080.404 kb on + strand at 1080.405 kb on - strand at 1080.405 kb on - strand at 1080.405 kb on - strand at 1080.405 kb on - strand at 1080.405 kb on - strand at 1080.405 kb on - strand at 1080.405 kb on - strand at 1080.405 kb on - strand at 1080.423 kb on - strand at 1080.436 kb on + strand at 1080.436 kb on + strand at 1080.436 kb on + strand at 1080.436 kb on + strand at 1080.437 kb on - strand at 1080.437 kb on - strand at 1080.491 kb on + strand at 1080.491 kb on + strand at 1080.492 kb on - strand at 1080.889 kb on + strand, within PP_0938 at 1080.889 kb on + strand, within PP_0938 at 1080.889 kb on + strand, within PP_0938 at 1080.889 kb on + strand, within PP_0938 at 1080.889 kb on + strand, within PP_0938 at 1080.889 kb on + strand, within PP_0938 at 1080.889 kb on + strand, within PP_0938 at 1080.889 kb on + strand, within PP_0938 at 1080.889 kb on + strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.890 kb on - strand, within PP_0938 at 1080.919 kb on - strand, within PP_0938 at 1080.990 kb on + strand, within PP_0938 at 1080.990 kb on + strand, within PP_0938 at 1080.991 kb on - strand, within PP_0938 at 1080.991 kb on - strand, within PP_0938 at 1080.991 kb on - strand, within PP_0938 at 1081.022 kb on + strand, within PP_0938 at 1081.022 kb on + strand, within PP_0938 at 1081.022 kb on + strand, within PP_0938 at 1081.022 kb on + strand, within PP_0938 at 1081.023 kb on - strand, within PP_0938 at 1081.023 kb on - strand, within PP_0938 at 1081.031 kb on - strand, within PP_0938 at 1081.031 kb on - strand, within PP_0938 at 1081.031 kb on - strand, within PP_0938 at 1081.031 kb on - strand at 1081.166 kb on + strand, within PP_0938 at 1081.199 kb on - strand, within PP_0938 at 1081.571 kb on + strand, within PP_0938 at 1081.572 kb on - strand, within PP_0938 at 1081.572 kb on - strand at 1081.585 kb on + strand, within PP_0938 at 1081.585 kb on + strand, within PP_0938 at 1081.585 kb on + strand, within PP_0938 at 1081.586 kb on - strand, within PP_0938 at 1081.586 kb on - strand, within PP_0938 at 1081.586 kb on - strand, within PP_0938 at 1081.781 kb on - strand, within PP_0938 at 1081.861 kb on + strand, within PP_0938 at 1081.861 kb on + strand, within PP_0938 at 1081.861 kb on + strand, within PP_0938 at 1081.861 kb on + strand, within PP_0938 at 1081.861 kb on + strand, within PP_0938 at 1081.862 kb on - strand, within PP_0938 at 1081.862 kb on - strand, within PP_0938 at 1081.903 kb on + strand, within PP_0938 at 1081.903 kb on + strand, within PP_0938 at 1081.903 kb on + strand, within PP_0938 at 1081.903 kb on + strand, within PP_0938 at 1081.904 kb on - strand, within PP_0938 at 1081.905 kb on + strand, within PP_0938 at 1081.905 kb on + strand, within PP_0938 at 1081.905 kb on + strand, within PP_0938 at 1081.906 kb on - strand, within PP_0938 at 1081.915 kb on + strand, within PP_0938 at 1081.915 kb on + strand, within PP_0938 at 1081.994 kb on - strand, within PP_0938 at 1081.994 kb on - strand, within PP_0938 at 1082.249 kb on - strand, within PP_0938 at 1082.570 kb on + strand, within PP_0938 at 1082.570 kb on + strand, within PP_0938 at 1082.890 kb on + strand, within PP_0938 at 1082.933 kb on + strand, within PP_0938 at 1082.933 kb on + strand, within PP_0938 at 1082.933 kb on + strand, within PP_0938 at 1082.934 kb on - strand, within PP_0938 at 1082.934 kb on - strand, within PP_0938 at 1083.208 kb on - strand, within PP_0938 at 1083.208 kb on - strand, within PP_0938 at 1083.394 kb on + strand, within PP_0938 at 1083.394 kb on + strand, within PP_0938 at 1083.395 kb on - strand, within PP_0938 at 1083.399 kb on + strand, within PP_0938 at 1083.400 kb on - strand, within PP_0938 at 1083.400 kb on - strand, within PP_0938 at 1083.450 kb on + strand at 1083.529 kb on + strand, within PP_0938 at 1083.529 kb on + strand, within PP_0938 at 1083.530 kb on - strand, within PP_0938 at 1083.826 kb on + strand at 1083.826 kb on + strand at 1083.827 kb on - strand at 1083.868 kb on + strand at 1083.889 kb on - strand at 1083.889 kb on - strand at 1084.128 kb on + strand at 1084.128 kb on + strand at 1084.128 kb on + strand at 1084.128 kb on + strand at 1084.128 kb on + strand at 1084.129 kb on - strand at 1084.129 kb on - strand at 1084.172 kb on - strand at 1084.172 kb on - strand at 1084.512 kb on + strand at 1084.582 kb on - strand, within PP_0939 at 1084.582 kb on - strand, within PP_0939 at 1084.613 kb on + strand, within PP_0939 at 1084.614 kb on - strand, within PP_0939 at 1084.648 kb on - strand, within PP_0939 at 1084.672 kb on - strand, within PP_0939 at 1084.672 kb on - strand, within PP_0939 at 1084.672 kb on - strand, within PP_0939 at 1084.724 kb on + strand, within PP_0939 at 1084.725 kb on - strand, within PP_0939 at 1084.791 kb on + strand, within PP_0939 at 1084.791 kb on + strand, within PP_0939 at 1084.909 kb on + strand, within PP_0939 at 1084.910 kb on - strand, within PP_0939 at 1085.015 kb on + strand at 1085.016 kb on - strand at 1085.029 kb on + strand at 1085.043 kb on + strand at 1085.044 kb on - strand at 1085.150 kb on + strand at 1085.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 1,079,421 + PP_0937 0.42 -1.4 1,079,602 - PP_0937 0.55 +1.7 1,079,602 - PP_0937 0.55 +0.5 1,079,778 - PP_0937 0.67 +0.3 1,079,880 - PP_0937 0.74 +0.2 1,080,057 + PP_0937 0.86 -0.5 1,080,111 + PP_0937 0.90 +0.9 1,080,229 - -1.9 1,080,229 - -0.5 1,080,229 - -0.5 1,080,243 + +0.2 1,080,243 + +0.1 1,080,243 + +0.7 1,080,243 + -0.6 1,080,243 + -0.5 1,080,244 - -1.1 1,080,244 - -1.4 1,080,404 + -0.5 1,080,404 + -2.7 1,080,404 + +1.2 1,080,404 + -2.1 1,080,404 + -1.1 1,080,404 + -0.2 1,080,405 - -1.1 1,080,405 - -1.6 1,080,405 - -1.1 1,080,405 - +0.1 1,080,405 - +1.1 1,080,405 - -0.3 1,080,405 - -0.7 1,080,405 - -0.9 1,080,423 - +0.1 1,080,436 + -0.9 1,080,436 + -0.7 1,080,436 + -0.5 1,080,436 + -0.3 1,080,437 - -2.5 1,080,437 - +0.5 1,080,491 + -0.7 1,080,491 + -0.3 1,080,492 - -0.5 1,080,889 + PP_0938 0.14 -1.6 1,080,889 + PP_0938 0.14 -0.3 1,080,889 + PP_0938 0.14 -0.9 1,080,889 + PP_0938 0.14 -1.4 1,080,889 + PP_0938 0.14 -1.7 1,080,889 + PP_0938 0.14 +0.9 1,080,889 + PP_0938 0.14 -0.5 1,080,889 + PP_0938 0.14 +0.8 1,080,889 + PP_0938 0.14 -0.5 1,080,890 - PP_0938 0.14 +1.5 1,080,890 - PP_0938 0.14 -0.5 1,080,890 - PP_0938 0.14 +0.1 1,080,890 - PP_0938 0.14 +0.5 1,080,890 - PP_0938 0.14 -0.5 1,080,890 - PP_0938 0.14 -1.9 1,080,890 - PP_0938 0.14 +0.2 1,080,890 - PP_0938 0.14 -1.9 1,080,890 - PP_0938 0.14 +0.5 1,080,890 - PP_0938 0.14 +0.7 1,080,919 - PP_0938 0.15 +0.1 1,080,990 + PP_0938 0.17 +0.1 1,080,990 + PP_0938 0.17 -0.3 1,080,991 - PP_0938 0.17 -0.3 1,080,991 - PP_0938 0.17 -0.9 1,080,991 - PP_0938 0.17 +0.3 1,081,022 + PP_0938 0.18 -1.5 1,081,022 + PP_0938 0.18 -1.3 1,081,022 + PP_0938 0.18 -0.7 1,081,022 + PP_0938 0.18 -1.3 1,081,023 - PP_0938 0.18 -0.3 1,081,023 - PP_0938 0.18 +0.5 1,081,031 - PP_0938 0.18 -0.2 1,081,031 - PP_0938 0.18 -1.3 1,081,031 - PP_0938 0.18 -0.7 1,081,031 - -0.3 1,081,166 + PP_0938 0.21 +0.1 1,081,199 - PP_0938 0.22 -0.5 1,081,571 + PP_0938 0.32 +1.1 1,081,572 - PP_0938 0.32 +0.1 1,081,572 - +0.5 1,081,585 + PP_0938 0.32 +2.1 1,081,585 + PP_0938 0.32 -0.3 1,081,585 + PP_0938 0.32 -0.7 1,081,586 - PP_0938 0.32 -1.4 1,081,586 - PP_0938 0.32 -0.3 1,081,586 - PP_0938 0.32 +2.8 1,081,781 - PP_0938 0.38 -0.3 1,081,861 + PP_0938 0.40 +0.1 1,081,861 + PP_0938 0.40 -0.3 1,081,861 + PP_0938 0.40 -1.8 1,081,861 + PP_0938 0.40 +0.1 1,081,861 + PP_0938 0.40 +2.1 1,081,862 - PP_0938 0.40 -1.5 1,081,862 - PP_0938 0.40 -0.3 1,081,903 + PP_0938 0.41 -1.3 1,081,903 + PP_0938 0.41 +1.1 1,081,903 + PP_0938 0.41 -2.3 1,081,903 + PP_0938 0.41 +1.3 1,081,904 - PP_0938 0.41 +0.2 1,081,905 + PP_0938 0.41 -1.4 1,081,905 + PP_0938 0.41 +0.5 1,081,905 + PP_0938 0.41 +0.1 1,081,906 - PP_0938 0.41 +0.3 1,081,915 + PP_0938 0.41 +0.5 1,081,915 + PP_0938 0.41 +1.1 1,081,994 - PP_0938 0.43 +2.6 1,081,994 - PP_0938 0.43 +0.1 1,082,249 - PP_0938 0.50 -1.6 1,082,570 + PP_0938 0.58 -1.8 1,082,570 + PP_0938 0.58 -2.1 1,082,890 + PP_0938 0.67 +0.6 1,082,933 + PP_0938 0.68 +0.3 1,082,933 + PP_0938 0.68 +0.6 1,082,933 + PP_0938 0.68 +1.1 1,082,934 - PP_0938 0.68 +1.1 1,082,934 - PP_0938 0.68 -1.1 1,083,208 - PP_0938 0.75 -1.9 1,083,208 - PP_0938 0.75 +2.1 1,083,394 + PP_0938 0.80 -0.3 1,083,394 + PP_0938 0.80 -1.5 1,083,395 - PP_0938 0.80 +2.1 1,083,399 + PP_0938 0.80 +0.2 1,083,400 - PP_0938 0.80 -0.3 1,083,400 - PP_0938 0.80 -0.6 1,083,450 + -0.7 1,083,529 + PP_0938 0.83 -0.3 1,083,529 + PP_0938 0.83 +2.1 1,083,530 - PP_0938 0.83 -1.7 1,083,826 + +2.1 1,083,826 + +1.1 1,083,827 - -0.9 1,083,868 + +0.8 1,083,889 - +2.1 1,083,889 - -1.1 1,084,128 + -1.7 1,084,128 + -1.5 1,084,128 + -0.1 1,084,128 + -0.3 1,084,128 + +0.5 1,084,129 - -0.9 1,084,129 - -0.3 1,084,172 - +0.0 1,084,172 - -0.8 1,084,512 + +1.1 1,084,582 - PP_0939 0.48 +0.9 1,084,582 - PP_0939 0.48 -0.2 1,084,613 + PP_0939 0.51 +1.3 1,084,614 - PP_0939 0.51 -0.4 1,084,648 - PP_0939 0.55 +0.6 1,084,672 - PP_0939 0.58 -0.3 1,084,672 - PP_0939 0.58 +0.2 1,084,672 - PP_0939 0.58 +3.3 1,084,724 + PP_0939 0.64 -2.2 1,084,725 - PP_0939 0.64 +0.9 1,084,791 + PP_0939 0.72 +0.5 1,084,791 + PP_0939 0.72 +1.1 1,084,909 + PP_0939 0.86 +0.0 1,084,910 - PP_0939 0.86 +0.3 1,085,015 + -0.2 1,085,016 - -0.0 1,085,029 + +0.9 1,085,043 + +0.3 1,085,044 - +0.4 1,085,150 + +1.1 1,085,151 - -0.3
Or see this region's nucleotide sequence