Strain Fitness in Pseudomonas putida KT2440 around PP_0339
Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-1-butanol 0.4 vol% |
---|---|---|---|---|---|
remove | |||||
407,163 | + | PP_0338 | 0.49 | -0.9 | |
408,006 | + | +1.2 | |||
408,069 | - | +0.7 | |||
408,271 | + | +0.7 | |||
408,507 | + | PP_0339 | 0.18 | +0.7 | |
408,547 | + | PP_0339 | 0.20 | +0.7 | |
408,626 | - | PP_0339 | 0.23 | +0.2 | |
408,626 | - | PP_0339 | 0.23 | -1.2 | |
408,628 | + | +0.2 | |||
408,701 | - | PP_0339 | 0.26 | -0.6 | |
408,712 | + | PP_0339 | 0.26 | -0.3 | |
408,713 | - | PP_0339 | 0.26 | -0.9 | |
408,713 | - | +1.7 | |||
408,867 | - | PP_0339 | 0.32 | -1.2 | |
408,931 | + | PP_0339 | 0.35 | -0.5 | |
408,932 | - | PP_0339 | 0.35 | -0.6 | |
408,932 | - | PP_0339 | 0.35 | -0.8 | |
409,072 | + | PP_0339 | 0.40 | -1.1 | |
409,073 | - | PP_0339 | 0.40 | -1.6 | |
409,073 | - | PP_0339 | 0.40 | +4.2 | |
409,112 | + | PP_0339 | 0.41 | -1.5 | |
409,299 | + | PP_0339 | 0.48 | -0.3 | |
409,300 | - | PP_0339 | 0.48 | -0.9 | |
409,337 | - | PP_0339 | 0.50 | +0.9 | |
409,564 | + | PP_0339 | 0.58 | -1.3 | |
409,565 | - | PP_0339 | 0.58 | -1.7 | |
409,684 | + | PP_0339 | 0.63 | -1.8 | |
409,705 | + | PP_0339 | 0.64 | +3.2 | |
409,706 | - | PP_0339 | 0.64 | +2.2 | |
409,714 | + | +2.2 | |||
410,051 | - | PP_0339 | 0.77 | +0.4 | |
410,329 | + | PP_0339 | 0.87 | -1.1 | |
410,329 | + | PP_0339 | 0.87 | -0.8 | |
410,330 | - | PP_0339 | 0.87 | +1.2 | |
410,354 | + | PP_0339 | 0.88 | -0.6 | |
410,811 | + | +0.2 | |||
411,041 | + | +0.1 | |||
411,054 | + | -0.1 | |||
411,400 | + | PP_0340 | 0.12 | +1.9 | |
411,401 | - | PP_0340 | 0.12 | +1.2 | |
411,416 | - | PP_0340 | 0.13 | +0.8 | |
411,604 | + | PP_0340 | 0.19 | +1.0 |
Or see this region's nucleotide sequence