Strain Fitness in Pseudomonas putida KT2440 around PP_0282

Experiment: 3-methyl-1-butanol 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0280 and PP_0281 overlap by 1 nucleotidesPP_0281 and PP_0282 are separated by 54 nucleotidesPP_0282 and PP_0283 are separated by 11 nucleotidesPP_0283 and PP_5438 are separated by 77 nucleotides PP_0280: PP_0280 - Amino acid ABC transporter, permease protein, at 337,879 to 338,568 _0280 PP_0281: PP_0281 - Amino acid ABC transporter, permease protein, at 338,568 to 339,260 _0281 PP_0282: PP_0282 - L-arginine ABC transporter - periplasmic binding subunit, at 339,315 to 340,067 _0282 PP_0283: PP_0283 - Arginine/ornithine transport ATP-binding protein AotP, at 340,079 to 340,852 _0283 PP_5438: PP_5438 - conserved protein of unknown function, at 340,930 to 341,106 _5438 Position (kb) 339 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 338.351 kb on + strand, within PP_0280at 338.402 kb on + strand, within PP_0280at 338.402 kb on + strand, within PP_0280at 338.426 kb on + strand, within PP_0280at 338.569 kb on + strandat 338.570 kb on - strandat 338.570 kb on - strandat 338.570 kb on - strandat 338.619 kb on - strandat 338.650 kb on + strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.671 kb on + strand, within PP_0281at 338.671 kb on + strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.906 kb on + strand, within PP_0281at 339.046 kb on + strand, within PP_0281at 339.046 kb on + strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.058 kb on - strand, within PP_0281at 339.058 kb on - strand, within PP_0281at 339.097 kb on + strand, within PP_0281at 339.255 kb on - strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.338 kb on - strandat 339.338 kb on - strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.359 kb on - strandat 339.362 kb on + strandat 339.363 kb on - strandat 339.514 kb on + strand, within PP_0282at 339.514 kb on + strand, within PP_0282at 339.515 kb on - strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.548 kb on + strand, within PP_0282at 339.571 kb on + strand, within PP_0282at 339.593 kb on - strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.632 kb on - strand, within PP_0282at 339.671 kb on + strand, within PP_0282at 339.671 kb on + strand, within PP_0282at 339.672 kb on - strand, within PP_0282at 339.742 kb on + strand, within PP_0282at 339.742 kb on + strand, within PP_0282at 339.743 kb on - strand, within PP_0282at 339.743 kb on - strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.746 kb on - strand, within PP_0282at 339.860 kb on + strand, within PP_0282at 340.057 kb on + strandat 340.058 kb on - strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.240 kb on + strand, within PP_0283at 340.267 kb on + strand, within PP_0283at 340.273 kb on + strand, within PP_0283at 340.274 kb on - strand, within PP_0283at 340.405 kb on - strand, within PP_0283at 340.405 kb on - strand, within PP_0283at 340.422 kb on + strand, within PP_0283at 340.717 kb on + strand, within PP_0283at 340.717 kb on + strand, within PP_0283at 340.718 kb on - strand, within PP_0283at 340.785 kb on - strandat 340.803 kb on + strandat 340.917 kb on + strandat 340.917 kb on + strandat 340.917 kb on + strandat 340.918 kb on - strandat 340.918 kb on - strandat 340.923 kb on - strandat 340.923 kb on - strandat 340.931 kb on + strandat 340.932 kb on - strandat 340.999 kb on + strand, within PP_5438

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol%
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338,351 + PP_0280 0.68 +1.1
338,402 + PP_0280 0.76 -0.5
338,402 + PP_0280 0.76 +0.3
338,426 + PP_0280 0.79 -0.6
338,569 + -0.4
338,570 - +1.4
338,570 - -2.9
338,570 - +0.8
338,619 - +0.4
338,650 + PP_0281 0.12 +1.3
338,651 - PP_0281 0.12 +1.9
338,651 - PP_0281 0.12 +0.2
338,651 - PP_0281 0.12 -1.2
338,651 - PP_0281 0.12 +0.1
338,671 + PP_0281 0.15 -0.2
338,671 + PP_0281 0.15 +0.0
338,672 - PP_0281 0.15 -1.9
338,672 - PP_0281 0.15 -0.5
338,672 - PP_0281 0.15 +0.9
338,906 + PP_0281 0.49 +0.3
339,046 + PP_0281 0.69 -0.8
339,046 + PP_0281 0.69 -0.8
339,047 - PP_0281 0.69 -1.1
339,047 - PP_0281 0.69 -1.5
339,047 - PP_0281 0.69 +1.0
339,050 + PP_0281 0.70 +0.4
339,050 + PP_0281 0.70 -0.1
339,050 + PP_0281 0.70 -0.9
339,051 - PP_0281 0.70 -0.1
339,051 - PP_0281 0.70 -0.6
339,051 - PP_0281 0.70 +0.1
339,051 - PP_0281 0.70 -1.1
339,051 - PP_0281 0.70 +1.3
339,051 - PP_0281 0.70 -0.6
339,051 - PP_0281 0.70 -0.5
339,058 - PP_0281 0.71 +1.3
339,058 - PP_0281 0.71 -1.4
339,097 + PP_0281 0.76 -0.5
339,255 - -0.3
339,337 + +0.1
339,337 + -2.4
339,337 + +1.3
339,337 + +0.5
339,338 - -0.1
339,338 - -0.8
339,358 + -0.5
339,358 + -0.2
339,358 + -0.8
339,358 + -1.2
339,359 - -1.8
339,362 + -0.1
339,363 - -2.2
339,514 + PP_0282 0.26 +0.7
339,514 + PP_0282 0.26 +0.0
339,515 - PP_0282 0.27 -1.0
339,523 + PP_0282 0.28 +1.4
339,523 + PP_0282 0.28 -0.8
339,523 + PP_0282 0.28 -0.9
339,524 - PP_0282 0.28 +0.0
339,524 - PP_0282 0.28 -1.2
339,524 - PP_0282 0.28 -0.7
339,524 - PP_0282 0.28 -0.3
339,524 - PP_0282 0.28 -1.2
339,548 + PP_0282 0.31 -1.8
339,571 + PP_0282 0.34 -0.7
339,593 - PP_0282 0.37 -0.5
339,631 + PP_0282 0.42 +0.1
339,631 + PP_0282 0.42 -0.8
339,631 + PP_0282 0.42 -0.6
339,631 + PP_0282 0.42 -0.5
339,631 + PP_0282 0.42 -0.6
339,632 - PP_0282 0.42 -0.9
339,671 + PP_0282 0.47 -1.7
339,671 + PP_0282 0.47 -0.2
339,672 - PP_0282 0.47 -1.6
339,742 + PP_0282 0.57 -1.2
339,742 + PP_0282 0.57 +0.0
339,743 - PP_0282 0.57 -2.0
339,743 - PP_0282 0.57 -0.2
339,745 + PP_0282 0.57 +0.1
339,745 + PP_0282 0.57 -2.0
339,745 + PP_0282 0.57 +0.6
339,746 - PP_0282 0.57 +0.2
339,860 + PP_0282 0.72 -0.3
340,057 + +0.0
340,058 - +1.0
340,069 + -0.9
340,069 + -0.6
340,069 + -1.0
340,069 + -0.1
340,070 - -0.1
340,070 - -1.5
340,070 - +0.8
340,070 - -0.0
340,070 - -1.6
340,070 - -2.6
340,070 - -1.2
340,240 + PP_0283 0.21 +0.6
340,267 + PP_0283 0.24 -0.2
340,273 + PP_0283 0.25 +0.1
340,274 - PP_0283 0.25 -0.1
340,405 - PP_0283 0.42 -0.0
340,405 - PP_0283 0.42 -0.4
340,422 + PP_0283 0.44 +0.1
340,717 + PP_0283 0.82 -0.1
340,717 + PP_0283 0.82 -1.1
340,718 - PP_0283 0.83 +1.5
340,785 - -0.4
340,803 + -2.4
340,917 + -0.2
340,917 + +1.0
340,917 + +1.3
340,918 - -2.5
340,918 - -0.6
340,923 - +1.5
340,923 - -0.3
340,931 + -0.7
340,932 - +1.1
340,999 + PP_5438 0.39 +2.6

Or see this region's nucleotide sequence