Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0257 and PP_0258 are separated by 175 nucleotides PP_0258 and PP_0259 are separated by 50 nucleotides PP_0259 and PP_0260 are separated by 64 nucleotides
PP_0257: PP_0257 - protein sulfur transferase, at 312,381 to 313,211
_0257
PP_0258: PP_0258 - regulator of murein cross-linking, at 313,387 to 313,827
_0258
PP_0259: PP_0259 - purine nucleotidase, at 313,878 to 314,540
_0259
PP_0260: PP_0260 - ADP-sugar pyrophosphorylase, at 314,605 to 315,171
_0260
Position (kb)
313
314 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 312.404 kb on - strand at 312.404 kb on - strand at 312.437 kb on + strand at 312.925 kb on + strand, within PP_0257 at 312.926 kb on - strand, within PP_0257 at 312.926 kb on - strand, within PP_0257 at 312.926 kb on - strand, within PP_0257 at 313.069 kb on + strand, within PP_0257 at 313.069 kb on + strand, within PP_0257 at 313.069 kb on + strand, within PP_0257 at 313.069 kb on + strand, within PP_0257 at 313.070 kb on - strand, within PP_0257 at 313.070 kb on - strand, within PP_0257 at 313.139 kb on - strand at 313.144 kb on + strand at 313.144 kb on + strand at 313.145 kb on - strand at 313.145 kb on - strand at 313.241 kb on + strand at 313.289 kb on + strand at 313.290 kb on - strand at 313.299 kb on + strand at 313.300 kb on - strand at 313.300 kb on - strand at 313.336 kb on - strand at 313.472 kb on + strand, within PP_0258 at 313.472 kb on + strand, within PP_0258 at 313.473 kb on - strand at 313.527 kb on - strand, within PP_0258 at 313.723 kb on + strand, within PP_0258 at 313.724 kb on - strand, within PP_0258 at 313.741 kb on + strand, within PP_0258 at 313.742 kb on - strand, within PP_0258 at 313.841 kb on + strand at 313.841 kb on + strand at 313.879 kb on + strand at 313.880 kb on - strand at 313.887 kb on + strand at 313.893 kb on + strand at 314.110 kb on + strand, within PP_0259 at 314.110 kb on + strand, within PP_0259 at 314.111 kb on - strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.140 kb on + strand, within PP_0259 at 314.141 kb on - strand, within PP_0259 at 314.141 kb on - strand, within PP_0259 at 314.141 kb on - strand, within PP_0259 at 314.247 kb on - strand, within PP_0259 at 314.313 kb on + strand, within PP_0259 at 314.313 kb on + strand, within PP_0259 at 314.314 kb on - strand, within PP_0259 at 314.314 kb on - strand, within PP_0259 at 314.341 kb on + strand, within PP_0259 at 314.410 kb on - strand, within PP_0259 at 314.467 kb on + strand, within PP_0259 at 314.468 kb on - strand, within PP_0259 at 314.468 kb on - strand, within PP_0259 at 314.572 kb on + strand at 314.572 kb on + strand at 314.572 kb on + strand at 314.572 kb on + strand at 314.573 kb on - strand at 314.573 kb on - strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.577 kb on + strand at 314.624 kb on + strand at 314.675 kb on + strand, within PP_0260 at 314.675 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.800 kb on + strand, within PP_0260 at 314.801 kb on - strand, within PP_0260 at 314.821 kb on + strand, within PP_0260 at 314.822 kb on - strand, within PP_0260 at 314.822 kb on - strand, within PP_0260
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 312,404 - -0.5 312,404 - +0.7 312,437 + +0.8 312,925 + PP_0257 0.65 +1.7 312,926 - PP_0257 0.66 +0.6 312,926 - PP_0257 0.66 +1.3 312,926 - PP_0257 0.66 -0.0 313,069 + PP_0257 0.83 -0.1 313,069 + PP_0257 0.83 +0.7 313,069 + PP_0257 0.83 -0.3 313,069 + PP_0257 0.83 -0.1 313,070 - PP_0257 0.83 -0.9 313,070 - PP_0257 0.83 +0.3 313,139 - +0.3 313,144 + +0.9 313,144 + -1.4 313,145 - +2.8 313,145 - -1.2 313,241 + -1.1 313,289 + +1.2 313,290 - -0.7 313,299 + -0.5 313,300 - -0.1 313,300 - +0.5 313,336 - +1.5 313,472 + PP_0258 0.19 +0.2 313,472 + PP_0258 0.19 -1.1 313,473 - +0.3 313,527 - PP_0258 0.32 -0.4 313,723 + PP_0258 0.76 -0.2 313,724 - PP_0258 0.76 -0.7 313,741 + PP_0258 0.80 -2.3 313,742 - PP_0258 0.80 -1.2 313,841 + +0.0 313,841 + -0.1 313,879 + +1.1 313,880 - +0.1 313,887 + +0.3 313,893 + -0.6 314,110 + PP_0259 0.35 +0.8 314,110 + PP_0259 0.35 -0.0 314,111 - PP_0259 0.35 -0.1 314,140 + PP_0259 0.40 +1.1 314,140 + PP_0259 0.40 -1.0 314,140 + PP_0259 0.40 -0.7 314,140 + PP_0259 0.40 +0.7 314,141 - PP_0259 0.40 +0.8 314,141 - PP_0259 0.40 -0.7 314,141 - PP_0259 0.40 +1.1 314,247 - PP_0259 0.56 +1.1 314,313 + PP_0259 0.66 +0.2 314,313 + PP_0259 0.66 -0.1 314,314 - PP_0259 0.66 +0.0 314,314 - PP_0259 0.66 -0.2 314,341 + PP_0259 0.70 +1.0 314,410 - PP_0259 0.80 -0.3 314,467 + PP_0259 0.89 +0.4 314,468 - PP_0259 0.89 +0.1 314,468 - PP_0259 0.89 -0.9 314,572 + -0.1 314,572 + -0.3 314,572 + -1.2 314,572 + +0.4 314,573 - -0.7 314,573 - -0.7 314,574 + -0.1 314,574 + +0.7 314,574 + -0.1 314,574 + -0.4 314,574 + +0.3 314,575 - +0.3 314,575 - +0.4 314,575 - +0.5 314,575 - +1.2 314,575 - +0.3 314,575 - -0.1 314,575 - -0.2 314,577 + -0.7 314,624 + +0.5 314,675 + PP_0260 0.12 +1.3 314,675 + PP_0260 0.12 +0.2 314,710 + PP_0260 0.19 +0.0 314,710 + PP_0260 0.19 -0.1 314,710 + PP_0260 0.19 -0.1 314,710 + PP_0260 0.19 -1.6 314,711 - PP_0260 0.19 +0.4 314,711 - PP_0260 0.19 -0.1 314,711 - PP_0260 0.19 +1.1 314,711 - PP_0260 0.19 -0.3 314,800 + PP_0260 0.34 +0.3 314,801 - PP_0260 0.35 -0.8 314,821 + PP_0260 0.38 -1.1 314,822 - PP_0260 0.38 -1.2 314,822 - PP_0260 0.38 +0.6
Or see this region's nucleotide sequence