Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0245 and PP_0246 overlap by 44 nucleotides PP_0246 and PP_0247 are separated by 13 nucleotides
PP_0245: PP_0245 - putative transcriptional accessory protein, at 298,540 to 301,125
_0245
PP_0246: PP_0246 - two-component system DNA-binding response transcriptional dual regulator, at 301,082 to 301,822
_0246
PP_0247: PP_0247 - Osmolarity sensor protein EnvZ, at 301,836 to 303,149
_0247
Position (kb) 301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 300.222 kb on + strand, within PP_0245 at 300.223 kb on - strand, within PP_0245 at 300.223 kb on - strand, within PP_0245 at 300.248 kb on + strand, within PP_0245 at 300.248 kb on + strand, within PP_0245 at 300.249 kb on - strand, within PP_0245 at 300.323 kb on + strand, within PP_0245 at 300.324 kb on - strand, within PP_0245 at 300.324 kb on - strand, within PP_0245 at 300.380 kb on + strand, within PP_0245 at 300.381 kb on - strand, within PP_0245 at 300.381 kb on - strand, within PP_0245 at 300.551 kb on + strand, within PP_0245 at 300.561 kb on - strand, within PP_0245 at 300.561 kb on - strand, within PP_0245 at 300.561 kb on - strand, within PP_0245 at 300.843 kb on + strand, within PP_0245 at 300.866 kb on + strand, within PP_0245 at 300.867 kb on - strand at 300.867 kb on - strand at 300.888 kb on + strand at 300.889 kb on - strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.944 kb on - strand at 300.944 kb on - strand at 300.944 kb on - strand at 300.945 kb on + strand at 300.946 kb on - strand at 300.946 kb on - strand at 300.946 kb on - strand at 301.078 kb on - strand at 301.078 kb on - strand at 301.185 kb on - strand, within PP_0246 at 301.403 kb on + strand, within PP_0246 at 301.527 kb on - strand, within PP_0246 at 301.761 kb on - strand at 301.761 kb on - strand at 301.787 kb on + strand at 301.787 kb on + strand at 301.788 kb on - strand at 301.932 kb on + strand at 301.933 kb on - strand at 301.972 kb on - strand, within PP_0247 at 301.972 kb on - strand, within PP_0247 at 302.004 kb on + strand, within PP_0247 at 302.005 kb on - strand, within PP_0247 at 302.005 kb on - strand, within PP_0247 at 302.058 kb on - strand, within PP_0247 at 302.058 kb on - strand, within PP_0247 at 302.106 kb on + strand, within PP_0247 at 302.106 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.241 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.449 kb on - strand, within PP_0247 at 302.449 kb on - strand, within PP_0247 at 302.731 kb on - strand, within PP_0247 at 302.731 kb on - strand, within PP_0247
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 300,222 + PP_0245 0.65 +0.4 300,223 - PP_0245 0.65 +0.1 300,223 - PP_0245 0.65 -3.2 300,248 + PP_0245 0.66 +1.5 300,248 + PP_0245 0.66 +0.5 300,249 - PP_0245 0.66 +0.4 300,323 + PP_0245 0.69 -1.3 300,324 - PP_0245 0.69 -1.1 300,324 - PP_0245 0.69 -1.7 300,380 + PP_0245 0.71 -1.7 300,381 - PP_0245 0.71 +0.0 300,381 - PP_0245 0.71 -0.2 300,551 + PP_0245 0.78 +0.2 300,561 - PP_0245 0.78 -1.7 300,561 - PP_0245 0.78 -0.8 300,561 - PP_0245 0.78 -0.0 300,843 + PP_0245 0.89 -0.1 300,866 + PP_0245 0.90 -1.1 300,867 - +0.2 300,867 - -1.5 300,888 + -1.5 300,889 - +1.1 300,943 + +0.0 300,943 + -0.9 300,943 + -2.4 300,943 + +0.5 300,944 - +0.8 300,944 - -0.0 300,944 - -0.8 300,945 + -1.0 300,946 - +0.1 300,946 - +1.1 300,946 - +0.7 301,078 - -1.3 301,078 - -0.6 301,185 - PP_0246 0.14 -2.8 301,403 + PP_0246 0.43 -1.5 301,527 - PP_0246 0.60 -0.1 301,761 - +0.0 301,761 - -0.8 301,787 + -2.2 301,787 + -0.7 301,788 - -0.8 301,932 + -0.4 301,933 - +0.6 301,972 - PP_0247 0.10 -0.3 301,972 - PP_0247 0.10 -1.7 302,004 + PP_0247 0.13 -0.5 302,005 - PP_0247 0.13 -0.4 302,005 - PP_0247 0.13 +0.6 302,058 - PP_0247 0.17 -0.2 302,058 - PP_0247 0.17 -0.1 302,106 + PP_0247 0.21 -0.4 302,106 + PP_0247 0.21 +2.1 302,118 + PP_0247 0.21 -1.3 302,118 + PP_0247 0.21 +0.5 302,118 + PP_0247 0.21 -0.1 302,118 + PP_0247 0.21 -1.9 302,119 - PP_0247 0.22 -0.2 302,119 - PP_0247 0.22 +0.7 302,119 - PP_0247 0.22 -0.5 302,241 + PP_0247 0.31 +0.1 302,448 + PP_0247 0.47 -1.8 302,448 + PP_0247 0.47 +2.3 302,448 + PP_0247 0.47 -2.1 302,449 - PP_0247 0.47 +0.8 302,449 - PP_0247 0.47 -1.2 302,731 - PP_0247 0.68 -0.5 302,731 - PP_0247 0.68 -0.6
Or see this region's nucleotide sequence