Strain Fitness in Pseudomonas putida KT2440 around PP_0238

Experiment: 3-methyl-1-butanol 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0237 and PP_0238 are separated by 59 nucleotidesPP_0238 and PP_0239 are separated by 10 nucleotidesPP_0239 and PP_0240 overlap by 4 nucleotides PP_0237: PP_0237 - aliphatic sulfonate ABC transporter - periplasmic binding protein / transport of isethionate, at 291,619 to 292,584 _0237 PP_0238: PP_0238 - alkanesulfonate monooxygenase, at 292,644 to 293,792 _0238 PP_0239: PP_0239 - aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate, at 293,803 to 294,600 _0239 PP_0240: PP_0240 - Aliphatic sulfonates import ATP-binding protein SsuB, at 294,597 to 295,409 _0240 Position (kb) 292 293 294Strain fitness (log2 ratio) -2 -1 0 1 2 3at 291.794 kb on + strand, within PP_0237at 291.795 kb on - strand, within PP_0237at 291.795 kb on - strand, within PP_0237at 291.925 kb on + strand, within PP_0237at 291.925 kb on + strand, within PP_0237at 291.926 kb on - strand, within PP_0237at 291.926 kb on - strand, within PP_0237at 291.926 kb on - strand, within PP_0237at 291.926 kb on - strand, within PP_0237at 291.926 kb on - strand, within PP_0237at 291.963 kb on + strand, within PP_0237at 291.963 kb on + strand, within PP_0237at 292.051 kb on + strand, within PP_0237at 292.051 kb on + strand, within PP_0237at 292.051 kb on + strand, within PP_0237at 292.052 kb on - strand, within PP_0237at 292.052 kb on - strand, within PP_0237at 292.090 kb on + strand, within PP_0237at 292.111 kb on + strand, within PP_0237at 292.112 kb on - strand, within PP_0237at 292.112 kb on - strand, within PP_0237at 292.261 kb on + strand, within PP_0237at 292.279 kb on + strand, within PP_0237at 292.280 kb on - strand, within PP_0237at 292.280 kb on - strand, within PP_0237at 292.280 kb on - strand, within PP_0237at 292.439 kb on - strand, within PP_0237at 292.518 kb on - strandat 292.652 kb on + strandat 292.692 kb on + strandat 292.693 kb on - strandat 292.693 kb on - strandat 292.693 kb on - strandat 292.734 kb on + strandat 292.870 kb on + strand, within PP_0238at 292.871 kb on - strand, within PP_0238at 293.113 kb on + strand, within PP_0238at 293.114 kb on - strand, within PP_0238at 293.133 kb on + strand, within PP_0238at 293.167 kb on - strand, within PP_0238at 293.309 kb on - strand, within PP_0238at 293.599 kb on - strand, within PP_0238at 293.618 kb on + strandat 293.618 kb on + strand, within PP_0238at 293.618 kb on + strand, within PP_0238at 293.619 kb on - strand, within PP_0238at 293.619 kb on - strand, within PP_0238at 293.659 kb on - strand, within PP_0238at 293.727 kb on + strandat 293.728 kb on - strandat 293.731 kb on + strandat 293.731 kb on + strandat 293.732 kb on - strandat 293.732 kb on - strandat 293.732 kb on - strandat 293.732 kb on - strandat 293.877 kb on - strandat 293.916 kb on + strand, within PP_0239at 293.931 kb on + strand, within PP_0239at 293.931 kb on + strand, within PP_0239at 294.108 kb on - strand, within PP_0239at 294.223 kb on + strand, within PP_0239at 294.231 kb on + strand, within PP_0239at 294.232 kb on - strand, within PP_0239at 294.236 kb on - strand, within PP_0239at 294.250 kb on - strand, within PP_0239at 294.287 kb on - strand, within PP_0239at 294.476 kb on + strand, within PP_0239at 294.496 kb on + strand, within PP_0239at 294.496 kb on + strand, within PP_0239at 294.497 kb on - strand, within PP_0239at 294.572 kb on - strandat 294.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol%
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291,794 + PP_0237 0.18 +0.2
291,795 - PP_0237 0.18 +0.8
291,795 - PP_0237 0.18 +0.4
291,925 + PP_0237 0.32 -0.8
291,925 + PP_0237 0.32 +0.8
291,926 - PP_0237 0.32 -0.2
291,926 - PP_0237 0.32 +0.4
291,926 - PP_0237 0.32 +0.4
291,926 - PP_0237 0.32 +0.4
291,926 - PP_0237 0.32 +0.4
291,963 + PP_0237 0.36 +0.1
291,963 + PP_0237 0.36 -0.6
292,051 + PP_0237 0.45 +0.1
292,051 + PP_0237 0.45 -0.5
292,051 + PP_0237 0.45 +0.8
292,052 - PP_0237 0.45 -1.8
292,052 - PP_0237 0.45 +1.6
292,090 + PP_0237 0.49 -0.5
292,111 + PP_0237 0.51 -1.3
292,112 - PP_0237 0.51 +0.1
292,112 - PP_0237 0.51 -0.4
292,261 + PP_0237 0.66 +1.1
292,279 + PP_0237 0.68 +0.1
292,280 - PP_0237 0.68 +2.3
292,280 - PP_0237 0.68 +0.1
292,280 - PP_0237 0.68 +0.0
292,439 - PP_0237 0.85 +1.0
292,518 - -0.6
292,652 + -0.2
292,692 + -0.7
292,693 - -0.7
292,693 - +0.5
292,693 - +0.1
292,734 + +0.3
292,870 + PP_0238 0.20 +1.1
292,871 - PP_0238 0.20 +1.3
293,113 + PP_0238 0.41 +0.2
293,114 - PP_0238 0.41 +1.2
293,133 + PP_0238 0.43 +1.4
293,167 - PP_0238 0.46 -0.7
293,309 - PP_0238 0.58 +0.6
293,599 - PP_0238 0.83 -0.1
293,618 + +2.9
293,618 + PP_0238 0.85 +1.2
293,618 + PP_0238 0.85 +0.8
293,619 - PP_0238 0.85 -0.8
293,619 - PP_0238 0.85 +0.1
293,659 - PP_0238 0.88 +0.6
293,727 + -0.8
293,728 - +0.3
293,731 + -0.9
293,731 + -0.5
293,732 - +1.3
293,732 - -1.3
293,732 - +0.3
293,732 - +1.8
293,877 - -0.3
293,916 + PP_0239 0.14 +0.3
293,931 + PP_0239 0.16 -1.6
293,931 + PP_0239 0.16 +0.5
294,108 - PP_0239 0.38 +0.0
294,223 + PP_0239 0.53 +0.2
294,231 + PP_0239 0.54 +0.7
294,232 - PP_0239 0.54 -0.5
294,236 - PP_0239 0.54 -0.4
294,250 - PP_0239 0.56 +0.7
294,287 - PP_0239 0.61 -1.1
294,476 + PP_0239 0.84 +1.2
294,496 + PP_0239 0.87 -0.3
294,496 + PP_0239 0.87 -0.4
294,497 - PP_0239 0.87 +1.0
294,572 - +0.5
294,572 - -1.5

Or see this region's nucleotide sequence