Strain Fitness in Pseudomonas putida KT2440 around PP_0217

Experiment: 3-methyl-1-butanol 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0216 and PP_0217 are separated by 99 nucleotidesPP_0217 and PP_0218 are separated by 146 nucleotides PP_0216: PP_0216 - putative sensory box/GGDEF family protein, at 267,641 to 268,669 _0216 PP_0217: PP_0217 - delta-9 fatty acid desaturase, at 268,769 to 269,953 _0217 PP_0218: PP_0218 - Sensory box protein, at 270,100 to 271,995 _0218 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 267.809 kb on + strand, within PP_0216at 267.809 kb on + strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.856 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.040 kb on - strand, within PP_0216at 268.227 kb on + strand, within PP_0216at 268.227 kb on + strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.310 kb on + strand, within PP_0216at 268.310 kb on + strand, within PP_0216at 268.311 kb on - strand, within PP_0216at 268.354 kb on - strand, within PP_0216at 268.378 kb on - strand, within PP_0216at 268.422 kb on + strand, within PP_0216at 268.423 kb on - strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.438 kb on - strand, within PP_0216at 268.565 kb on + strand, within PP_0216at 268.565 kb on + strand, within PP_0216at 268.691 kb on - strandat 268.691 kb on - strandat 268.794 kb on + strandat 268.856 kb on + strandat 268.857 kb on - strandat 268.857 kb on - strandat 268.857 kb on - strandat 268.942 kb on - strand, within PP_0217at 269.319 kb on + strand, within PP_0217at 269.375 kb on + strand, within PP_0217at 269.376 kb on - strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.647 kb on - strand, within PP_0217at 269.689 kb on - strand, within PP_0217at 269.859 kb on + strandat 269.860 kb on - strandat 269.944 kb on + strandat 269.944 kb on + strandat 269.945 kb on - strandat 269.946 kb on + strandat 269.946 kb on + strandat 269.946 kb on + strandat 269.947 kb on - strandat 269.947 kb on - strandat 269.947 kb on - strandat 269.947 kb on - strandat 269.947 kb on - strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.954 kb on - strandat 269.954 kb on - strandat 269.954 kb on - strandat 269.954 kb on - strandat 269.963 kb on + strandat 269.963 kb on + strandat 269.963 kb on + strandat 269.964 kb on - strandat 269.994 kb on - strandat 269.994 kb on - strandat 270.011 kb on + strandat 270.033 kb on + strandat 270.033 kb on + strandat 270.033 kb on + strandat 270.034 kb on - strandat 270.061 kb on - strandat 270.061 kb on - strandat 270.062 kb on + strandat 270.062 kb on + strandat 270.062 kb on + strandat 270.062 kb on - strandat 270.063 kb on - strandat 270.142 kb on + strandat 270.142 kb on + strandat 270.143 kb on - strandat 270.143 kb on - strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.278 kb on - strandat 270.278 kb on - strandat 270.278 kb on - strandat 270.458 kb on - strand, within PP_0218at 270.458 kb on - strand, within PP_0218at 270.526 kb on + strand, within PP_0218at 270.527 kb on - strand, within PP_0218at 270.527 kb on - strand, within PP_0218at 270.608 kb on - strand, within PP_0218at 270.664 kb on + strand, within PP_0218at 270.664 kb on + strand, within PP_0218at 270.665 kb on - strand, within PP_0218at 270.721 kb on + strand, within PP_0218at 270.863 kb on + strand, within PP_0218at 270.864 kb on - strand, within PP_0218at 270.864 kb on - strand, within PP_0218at 270.864 kb on - strand, within PP_0218at 270.864 kb on - strand, within PP_0218at 270.882 kb on + strand, within PP_0218at 270.883 kb on - strand, within PP_0218at 270.883 kb on - strand, within PP_0218

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol%
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267,809 + PP_0216 0.16 -0.6
267,809 + PP_0216 0.16 -0.9
267,810 - PP_0216 0.16 -0.2
267,810 - PP_0216 0.16 +0.5
267,810 - PP_0216 0.16 -0.3
267,856 + PP_0216 0.21 +1.2
267,981 + PP_0216 0.33 -0.0
267,981 + PP_0216 0.33 -1.9
267,981 + PP_0216 0.33 -0.1
267,981 + PP_0216 0.33 -0.4
267,981 + PP_0216 0.33 +0.5
267,981 + PP_0216 0.33 +1.3
267,981 + PP_0216 0.33 +0.5
267,981 + PP_0216 0.33 +0.7
267,981 + PP_0216 0.33 -0.0
267,981 + PP_0216 0.33 +0.1
267,982 - PP_0216 0.33 +0.6
267,982 - PP_0216 0.33 -0.2
267,982 - PP_0216 0.33 -0.1
267,982 - PP_0216 0.33 +0.3
267,982 - PP_0216 0.33 +0.2
267,982 - PP_0216 0.33 -0.8
268,039 + PP_0216 0.39 -0.5
268,039 + PP_0216 0.39 -0.9
268,039 + PP_0216 0.39 -0.3
268,039 + PP_0216 0.39 -0.0
268,039 + PP_0216 0.39 +1.2
268,040 - PP_0216 0.39 -1.0
268,227 + PP_0216 0.57 +0.7
268,227 + PP_0216 0.57 -0.1
268,228 - PP_0216 0.57 -1.0
268,228 - PP_0216 0.57 -0.4
268,228 - PP_0216 0.57 +0.3
268,228 - PP_0216 0.57 -0.6
268,310 + PP_0216 0.65 -0.0
268,310 + PP_0216 0.65 +0.1
268,311 - PP_0216 0.65 +0.1
268,354 - PP_0216 0.69 +0.8
268,378 - PP_0216 0.72 -0.0
268,422 + PP_0216 0.76 -1.1
268,423 - PP_0216 0.76 -1.1
268,437 + PP_0216 0.77 +1.2
268,437 + PP_0216 0.77 +0.6
268,437 + PP_0216 0.77 +0.5
268,437 + PP_0216 0.77 +0.1
268,437 + PP_0216 0.77 -0.4
268,438 - PP_0216 0.77 +0.3
268,565 + PP_0216 0.90 -0.2
268,565 + PP_0216 0.90 +0.8
268,691 - +0.7
268,691 - -0.1
268,794 + -0.6
268,856 + +0.9
268,857 - +0.7
268,857 - -1.1
268,857 - +0.5
268,942 - PP_0217 0.15 -2.1
269,319 + PP_0217 0.46 +0.9
269,375 + PP_0217 0.51 -0.1
269,376 - PP_0217 0.51 -2.7
269,486 + PP_0217 0.61 -1.5
269,486 + PP_0217 0.61 -0.0
269,486 + PP_0217 0.61 -0.8
269,498 + PP_0217 0.62 -0.2
269,498 + PP_0217 0.62 -1.7
269,498 + PP_0217 0.62 -1.2
269,498 + PP_0217 0.62 -0.3
269,498 + PP_0217 0.62 +0.0
269,499 - PP_0217 0.62 +0.2
269,499 - PP_0217 0.62 -2.2
269,499 - PP_0217 0.62 -1.4
269,608 - PP_0217 0.71 +0.4
269,608 - PP_0217 0.71 -0.8
269,608 - PP_0217 0.71 -0.5
269,608 - PP_0217 0.71 +0.1
269,647 - PP_0217 0.74 -2.6
269,689 - PP_0217 0.78 -0.4
269,859 + -1.3
269,860 - -1.1
269,944 + -0.4
269,944 + +2.3
269,945 - +0.1
269,946 + -0.7
269,946 + -1.2
269,946 + -1.8
269,947 - -1.3
269,947 - -1.0
269,947 - -1.2
269,947 - -1.0
269,947 - -1.2
269,953 + +0.6
269,953 + +0.1
269,953 + -0.2
269,953 + +0.8
269,953 + +0.1
269,953 + -1.3
269,954 - -2.9
269,954 - -2.1
269,954 - -1.3
269,954 - -2.0
269,963 + +0.5
269,963 + +0.6
269,963 + +0.7
269,964 - -2.7
269,994 - -1.0
269,994 - -2.8
270,011 + -1.3
270,033 + -0.5
270,033 + -0.1
270,033 + -0.2
270,034 - -2.1
270,061 - -1.0
270,061 - -0.5
270,062 + -0.4
270,062 + +0.4
270,062 + +1.4
270,062 - -0.9
270,063 - -0.8
270,142 + -1.7
270,142 + -2.1
270,143 - -0.3
270,143 - -2.9
270,277 + -2.2
270,277 + -0.2
270,277 + -1.2
270,277 + -1.9
270,277 + -1.4
270,277 + -1.9
270,277 + -2.1
270,277 + -0.8
270,278 - -2.3
270,278 - -2.5
270,278 - -1.4
270,458 - PP_0218 0.19 -0.9
270,458 - PP_0218 0.19 -2.0
270,526 + PP_0218 0.22 -2.0
270,527 - PP_0218 0.23 -2.9
270,527 - PP_0218 0.23 -3.2
270,608 - PP_0218 0.27 -3.3
270,664 + PP_0218 0.30 -2.5
270,664 + PP_0218 0.30 -3.1
270,665 - PP_0218 0.30 -2.6
270,721 + PP_0218 0.33 -2.8
270,863 + PP_0218 0.40 -1.8
270,864 - PP_0218 0.40 -0.8
270,864 - PP_0218 0.40 -0.3
270,864 - PP_0218 0.40 -2.1
270,864 - PP_0218 0.40 -0.4
270,882 + PP_0218 0.41 -2.1
270,883 - PP_0218 0.41 -2.7
270,883 - PP_0218 0.41 -1.1

Or see this region's nucleotide sequence