Experiment: 3-methyl-1-butanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0041 and PP_0042 are separated by 202 nucleotides PP_0042 and PP_0043 are separated by 162 nucleotides
PP_0041: PP_0041 - cadmium translocating P-type ATPase, at 43,527 to 45,524
_0041
PP_0042: PP_0042 - conserved exported protein of unknown function, at 45,727 to 46,050
_0042
PP_0043: PP_0043 - cation efflux system protein, at 46,213 to 49,374
_0043
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.792 kb on + strand, within PP_0041 at 44.793 kb on - strand, within PP_0041 at 44.814 kb on + strand at 44.969 kb on + strand, within PP_0041 at 44.970 kb on - strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.988 kb on + strand, within PP_0041 at 44.989 kb on - strand, within PP_0041 at 45.090 kb on + strand, within PP_0041 at 45.091 kb on - strand, within PP_0041 at 45.157 kb on + strand, within PP_0041 at 45.293 kb on + strand, within PP_0041 at 45.305 kb on + strand, within PP_0041 at 45.332 kb on - strand at 45.332 kb on - strand at 45.332 kb on - strand at 45.343 kb on + strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.473 kb on + strand at 45.474 kb on - strand at 45.525 kb on - strand at 45.525 kb on - strand at 45.595 kb on + strand at 45.602 kb on + strand at 45.602 kb on + strand at 45.646 kb on - strand at 45.815 kb on + strand, within PP_0042 at 45.815 kb on + strand, within PP_0042 at 45.815 kb on + strand, within PP_0042 at 45.816 kb on - strand, within PP_0042 at 45.828 kb on + strand, within PP_0042 at 45.829 kb on - strand, within PP_0042 at 45.868 kb on + strand, within PP_0042 at 45.868 kb on + strand, within PP_0042 at 45.869 kb on - strand, within PP_0042 at 45.881 kb on + strand, within PP_0042 at 45.882 kb on - strand, within PP_0042 at 45.882 kb on - strand, within PP_0042 at 45.962 kb on + strand, within PP_0042 at 45.963 kb on - strand, within PP_0042 at 46.089 kb on + strand at 46.090 kb on - strand at 46.214 kb on + strand at 46.215 kb on - strand at 46.219 kb on - strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.283 kb on - strand at 46.525 kb on + strand at 46.526 kb on - strand at 46.526 kb on - strand at 46.779 kb on - strand, within PP_0043 at 47.023 kb on + strand, within PP_0043 at 47.024 kb on - strand, within PP_0043 at 47.024 kb on - strand, within PP_0043
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.4 vol% remove 44,792 + PP_0041 0.63 +0.7 44,793 - PP_0041 0.63 -0.6 44,814 + +2.3 44,969 + PP_0041 0.72 +0.8 44,970 - PP_0041 0.72 +0.3 44,982 + PP_0041 0.73 +0.9 44,982 + PP_0041 0.73 +0.3 44,982 + PP_0041 0.73 +1.0 44,982 + PP_0041 0.73 -0.5 44,983 - PP_0041 0.73 -0.5 44,983 - PP_0041 0.73 +0.4 44,983 - PP_0041 0.73 -0.6 44,983 - PP_0041 0.73 -0.1 44,988 + PP_0041 0.73 -0.5 44,989 - PP_0041 0.73 +0.9 45,090 + PP_0041 0.78 +0.5 45,091 - PP_0041 0.78 -0.1 45,157 + PP_0041 0.82 -0.4 45,293 + PP_0041 0.88 +1.5 45,305 + PP_0041 0.89 -0.2 45,332 - -0.1 45,332 - -1.1 45,332 - +0.3 45,343 + +0.5 45,344 - +0.6 45,344 - +0.1 45,344 - -0.1 45,344 - +0.4 45,473 + -2.5 45,474 - -1.2 45,525 - -1.6 45,525 - -0.5 45,595 + -1.0 45,602 + -0.7 45,602 + -1.3 45,646 - +0.7 45,815 + PP_0042 0.27 -0.6 45,815 + PP_0042 0.27 -0.9 45,815 + PP_0042 0.27 +0.6 45,816 - PP_0042 0.27 -2.4 45,828 + PP_0042 0.31 -0.5 45,829 - PP_0042 0.31 -1.3 45,868 + PP_0042 0.44 -0.7 45,868 + PP_0042 0.44 -1.0 45,869 - PP_0042 0.44 -0.4 45,881 + PP_0042 0.48 -0.8 45,882 - PP_0042 0.48 +0.1 45,882 - PP_0042 0.48 -0.7 45,962 + PP_0042 0.73 +0.9 45,963 - PP_0042 0.73 -0.7 46,089 + -0.9 46,090 - -1.4 46,214 + -0.4 46,215 - +0.4 46,219 - +1.0 46,268 + -0.4 46,268 + +0.0 46,268 + -1.5 46,283 - -0.3 46,525 + +0.4 46,526 - +0.7 46,526 - -0.6 46,779 - PP_0043 0.18 -0.6 47,023 + PP_0043 0.26 -0.2 47,024 - PP_0043 0.26 +0.9 47,024 - PP_0043 0.26 +0.3
Or see this region's nucleotide sequence