Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF951 and GFF952 are separated by 194 nucleotides GFF952 and GFF953 are separated by 63 nucleotides
GFF951 - FIG000906: Predicted Permease, at 126,806 to 127,888
GFF951
GFF952 - Positive regulator of L-idonate catabolism, at 128,083 to 129,081
GFF952
GFF953 - L-idonate, D-gluconate, 5-keto-D-gluconate transporter, at 129,145 to 130,464
GFF953
Position (kb) 128
129
130 Strain fitness (log2 ratio) -1
0
1
2
3 at 127.902 kb on - strand at 127.953 kb on - strand at 128.004 kb on + strand at 128.206 kb on - strand, within GFF952 at 128.315 kb on - strand, within GFF952 at 128.392 kb on + strand, within GFF952 at 128.393 kb on - strand, within GFF952 at 128.421 kb on + strand, within GFF952 at 128.724 kb on + strand, within GFF952 at 128.729 kb on + strand, within GFF952 at 128.729 kb on + strand, within GFF952 at 128.729 kb on + strand, within GFF952 at 128.729 kb on + strand, within GFF952 at 128.729 kb on + strand, within GFF952 at 128.730 kb on - strand, within GFF952 at 128.775 kb on - strand, within GFF952 at 128.806 kb on - strand, within GFF952 at 128.913 kb on + strand, within GFF952 at 128.914 kb on - strand, within GFF952 at 128.933 kb on - strand, within GFF952 at 128.933 kb on - strand, within GFF952 at 128.941 kb on - strand, within GFF952 at 129.353 kb on - strand, within GFF953 at 129.413 kb on - strand, within GFF953 at 129.421 kb on - strand, within GFF953 at 129.451 kb on + strand, within GFF953 at 129.492 kb on + strand, within GFF953 at 129.492 kb on + strand, within GFF953 at 129.492 kb on + strand, within GFF953 at 129.493 kb on - strand, within GFF953 at 129.493 kb on - strand, within GFF953 at 129.494 kb on + strand, within GFF953 at 129.494 kb on + strand, within GFF953 at 129.495 kb on - strand, within GFF953 at 129.654 kb on + strand, within GFF953 at 129.663 kb on + strand, within GFF953 at 129.664 kb on - strand, within GFF953 at 129.743 kb on - strand, within GFF953 at 129.837 kb on + strand, within GFF953 at 129.928 kb on + strand, within GFF953 at 129.936 kb on - strand, within GFF953 at 130.052 kb on + strand, within GFF953 at 130.053 kb on - strand, within GFF953
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI remove 127,902 - +0.5 127,953 - -0.3 128,004 + -0.9 128,206 - GFF952 0.12 +0.1 128,315 - GFF952 0.23 +0.2 128,392 + GFF952 0.31 +0.4 128,393 - GFF952 0.31 -0.2 128,421 + GFF952 0.34 -1.7 128,724 + GFF952 0.64 +0.5 128,729 + GFF952 0.65 +0.0 128,729 + GFF952 0.65 -0.5 128,729 + GFF952 0.65 -0.3 128,729 + GFF952 0.65 +0.7 128,729 + GFF952 0.65 +0.1 128,730 - GFF952 0.65 -0.2 128,775 - GFF952 0.69 +0.5 128,806 - GFF952 0.72 +0.9 128,913 + GFF952 0.83 +0.6 128,914 - GFF952 0.83 +0.8 128,933 - GFF952 0.85 +0.0 128,933 - GFF952 0.85 +3.2 128,941 - GFF952 0.86 +0.4 129,353 - GFF953 0.16 -1.6 129,413 - GFF953 0.20 +0.6 129,421 - GFF953 0.21 +0.2 129,451 + GFF953 0.23 +0.8 129,492 + GFF953 0.26 +0.7 129,492 + GFF953 0.26 +1.0 129,492 + GFF953 0.26 +0.7 129,493 - GFF953 0.26 -0.1 129,493 - GFF953 0.26 +0.3 129,494 + GFF953 0.26 +0.4 129,494 + GFF953 0.26 +2.0 129,495 - GFF953 0.27 +0.2 129,654 + GFF953 0.39 +0.2 129,663 + GFF953 0.39 +1.5 129,664 - GFF953 0.39 +0.6 129,743 - GFF953 0.45 -0.5 129,837 + GFF953 0.52 -0.6 129,928 + GFF953 0.59 -0.6 129,936 - GFF953 0.60 +0.8 130,052 + GFF953 0.69 +0.7 130,053 - GFF953 0.69 -0.7
Or see this region's nucleotide sequence