Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF746

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF744 and GFF745 are separated by 44 nucleotidesGFF745 and GFF746 are separated by 71 nucleotidesGFF746 and GFF747 are separated by 312 nucleotides GFF744 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 102,693 to 103,763 GFF744 GFF745 - Deoxyribose operon repressor, DeoR family, at 103,808 to 104,566 GFF745 GFF746 - Putative permease, at 104,638 to 105,246 GFF746 GFF747 - Multidrug translocase MdfA, at 105,559 to 106,791 GFF747 Position (kb) 104 105 106Strain fitness (log2 ratio) -1 0 1 2at 103.812 kb on + strandat 103.823 kb on - strandat 103.880 kb on - strandat 103.899 kb on - strand, within GFF745at 103.923 kb on - strand, within GFF745at 103.923 kb on - strand, within GFF745at 104.021 kb on - strand, within GFF745at 104.192 kb on - strand, within GFF745at 104.195 kb on - strand, within GFF745at 104.231 kb on - strand, within GFF745at 104.542 kb on + strandat 104.566 kb on + strandat 104.583 kb on + strandat 104.617 kb on + strandat 104.617 kb on + strandat 104.618 kb on - strandat 104.788 kb on - strand, within GFF746at 104.803 kb on + strand, within GFF746at 104.804 kb on - strand, within GFF746at 105.312 kb on + strandat 105.343 kb on - strandat 105.388 kb on + strandat 105.393 kb on + strandat 105.430 kb on + strandat 105.431 kb on - strandat 105.558 kb on + strandat 105.632 kb on - strandat 105.642 kb on + strandat 105.647 kb on - strandat 105.698 kb on - strand, within GFF747at 105.754 kb on - strand, within GFF747at 105.761 kb on + strand, within GFF747at 105.883 kb on - strand, within GFF747at 105.937 kb on + strand, within GFF747

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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103,812 + -0.1
103,823 - -0.2
103,880 - -0.7
103,899 - GFF745 0.12 +0.3
103,923 - GFF745 0.15 -0.4
103,923 - GFF745 0.15 -0.2
104,021 - GFF745 0.28 +0.3
104,192 - GFF745 0.51 -0.6
104,195 - GFF745 0.51 +1.4
104,231 - GFF745 0.56 +0.5
104,542 + -0.7
104,566 + -0.4
104,583 + -0.3
104,617 + -0.0
104,617 + +0.1
104,618 - +0.3
104,788 - GFF746 0.25 +1.1
104,803 + GFF746 0.27 -1.7
104,804 - GFF746 0.27 -0.8
105,312 + +0.6
105,343 - +1.9
105,388 + -1.3
105,393 + +0.1
105,430 + -0.7
105,431 - -0.6
105,558 + -0.4
105,632 - -0.0
105,642 + +1.6
105,647 - +0.5
105,698 - GFF747 0.11 -0.5
105,754 - GFF747 0.16 -0.1
105,761 + GFF747 0.16 -0.3
105,883 - GFF747 0.26 -1.2
105,937 + GFF747 0.31 +0.0

Or see this region's nucleotide sequence