Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF482

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF480 and GFF481 are separated by 117 nucleotidesGFF481 and GFF482 overlap by 4 nucleotidesGFF482 and GFF483 are separated by 103 nucleotidesGFF483 and GFF484 are separated by 81 nucleotides GFF480 - Serine transporter, at 202,849 to 204,147 GFF480 GFF481 - hypothetical protein, at 204,265 to 204,405 GFF481 GFF482 - FIG01047459: hypothetical protein, at 204,402 to 204,662 GFF482 GFF483 - hypothetical protein, at 204,766 to 204,897 GFF483 GFF484 - FIG002337: predicted inner membrane protein, at 204,979 to 206,658 GFF484 Position (kb) 204 205Strain fitness (log2 ratio) -2 -1 0 1at 203.824 kb on + strand, within GFF480at 204.011 kb on - strand, within GFF480at 204.147 kb on + strandat 204.184 kb on - strandat 204.197 kb on + strandat 204.198 kb on - strandat 204.210 kb on + strandat 204.211 kb on - strandat 204.398 kb on + strandat 204.398 kb on + strandat 204.399 kb on - strandat 204.464 kb on - strand, within GFF482at 204.512 kb on + strand, within GFF482at 204.663 kb on - strandat 204.701 kb on + strandat 204.704 kb on - strandat 204.789 kb on + strand, within GFF483at 204.789 kb on + strand, within GFF483at 204.798 kb on + strand, within GFF483at 205.022 kb on + strandat 205.022 kb on + strandat 205.022 kb on + strandat 205.030 kb on - strandat 205.057 kb on - strandat 205.138 kb on - strandat 205.195 kb on - strand, within GFF484at 205.195 kb on - strand, within GFF484at 205.348 kb on + strand, within GFF484at 205.349 kb on - strand, within GFF484at 205.359 kb on + strand, within GFF484at 205.430 kb on + strand, within GFF484at 205.489 kb on - strand, within GFF484at 205.566 kb on - strand, within GFF484at 205.635 kb on + strand, within GFF484at 205.635 kb on + strand, within GFF484at 205.635 kb on + strand, within GFF484

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
remove
203,824 + GFF480 0.75 +0.5
204,011 - GFF480 0.89 +0.0
204,147 + -0.2
204,184 - -0.4
204,197 + -0.7
204,198 - -1.2
204,210 + +0.6
204,211 - -0.6
204,398 + -0.1
204,398 + +0.2
204,399 - -1.6
204,464 - GFF482 0.24 -0.3
204,512 + GFF482 0.42 -0.9
204,663 - -0.4
204,701 + -0.1
204,704 - -0.4
204,789 + GFF483 0.17 -0.3
204,789 + GFF483 0.17 -0.2
204,798 + GFF483 0.24 +0.1
205,022 + +0.1
205,022 + +0.3
205,022 + -0.3
205,030 - -0.2
205,057 - -0.8
205,138 - -0.6
205,195 - GFF484 0.13 -0.4
205,195 - GFF484 0.13 -0.1
205,348 + GFF484 0.22 -0.4
205,349 - GFF484 0.22 +0.3
205,359 + GFF484 0.23 -0.4
205,430 + GFF484 0.27 +0.1
205,489 - GFF484 0.30 -0.0
205,566 - GFF484 0.35 +1.0
205,635 + GFF484 0.39 -1.2
205,635 + GFF484 0.39 +1.4
205,635 + GFF484 0.39 -1.8

Or see this region's nucleotide sequence