Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4311

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4309 and GFF4310 are separated by 25 nucleotidesGFF4310 and GFF4311 are separated by 169 nucleotidesGFF4311 and GFF4312 are separated by 392 nucleotidesGFF4312 and GFF4313 are separated by 83 nucleotides GFF4309 - Glyoxalase family protein, at 95,520 to 95,885 GFF4309 GFF4310 - Transcriptional regulator, DeoR family, at 95,911 to 96,603 GFF4310 GFF4311 - hypothetical protein, at 96,773 to 97,120 GFF4311 GFF4312 - hypothetical protein, at 97,513 to 97,665 GFF4312 GFF4313 - Nucleoside-specific channel-forming protein Tsx precursor, at 97,749 to 98,612 GFF4313 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 95.841 kb on - strand, within GFF4309at 95.864 kb on - strandat 95.869 kb on + strandat 95.869 kb on + strandat 95.870 kb on - strandat 95.887 kb on - strandat 95.893 kb on + strandat 96.127 kb on - strand, within GFF4310at 96.127 kb on - strand, within GFF4310at 96.159 kb on + strand, within GFF4310at 96.168 kb on - strand, within GFF4310at 96.280 kb on + strand, within GFF4310at 96.331 kb on - strand, within GFF4310at 96.410 kb on + strand, within GFF4310at 96.411 kb on - strand, within GFF4310at 96.411 kb on - strand, within GFF4310at 96.411 kb on - strand, within GFF4310at 96.677 kb on + strandat 96.687 kb on + strandat 96.687 kb on + strandat 96.689 kb on + strandat 96.689 kb on + strandat 96.689 kb on + strandat 96.690 kb on - strandat 96.690 kb on - strandat 96.769 kb on - strandat 96.772 kb on + strandat 96.961 kb on - strand, within GFF4311at 96.994 kb on + strand, within GFF4311at 96.995 kb on - strand, within GFF4311at 97.074 kb on - strand, within GFF4311at 97.074 kb on - strand, within GFF4311at 97.205 kb on + strandat 97.288 kb on - strandat 97.582 kb on - strand, within GFF4312at 97.584 kb on + strand, within GFF4312at 97.585 kb on - strand, within GFF4312at 97.960 kb on - strand, within GFF4313at 97.997 kb on - strand, within GFF4313at 98.104 kb on + strand, within GFF4313at 98.113 kb on + strand, within GFF4313at 98.114 kb on - strand, within GFF4313

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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95,841 - GFF4309 0.88 +1.5
95,864 - -0.3
95,869 + -0.4
95,869 + +0.0
95,870 - -1.1
95,887 - -1.0
95,893 + +0.1
96,127 - GFF4310 0.31 -0.4
96,127 - GFF4310 0.31 -0.2
96,159 + GFF4310 0.36 -0.5
96,168 - GFF4310 0.37 +1.3
96,280 + GFF4310 0.53 -0.3
96,331 - GFF4310 0.61 +0.4
96,410 + GFF4310 0.72 +0.8
96,411 - GFF4310 0.72 +1.1
96,411 - GFF4310 0.72 -2.7
96,411 - GFF4310 0.72 -0.4
96,677 + -0.0
96,687 + +0.2
96,687 + -0.5
96,689 + -0.5
96,689 + -0.2
96,689 + +0.1
96,690 - -0.3
96,690 - -0.5
96,769 - +0.3
96,772 + +0.3
96,961 - GFF4311 0.54 +0.1
96,994 + GFF4311 0.64 -1.2
96,995 - GFF4311 0.64 -0.4
97,074 - GFF4311 0.86 -1.8
97,074 - GFF4311 0.86 -1.1
97,205 + -0.3
97,288 - -0.9
97,582 - GFF4312 0.45 +0.5
97,584 + GFF4312 0.46 +0.5
97,585 - GFF4312 0.47 -1.8
97,960 - GFF4313 0.24 -0.8
97,997 - GFF4313 0.29 +2.7
98,104 + GFF4313 0.41 -0.7
98,113 + GFF4313 0.42 +0.3
98,114 - GFF4313 0.42 -0.1

Or see this region's nucleotide sequence