Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF408

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF406 and GFF407 overlap by 20 nucleotidesGFF407 and GFF408 overlap by 33 nucleotidesGFF408 and GFF409 are separated by 63 nucleotides GFF406 - Transcriptional regulator, LacI family, at 121,891 to 122,946 GFF406 GFF407 - hypothetical protein, at 122,927 to 123,046 GFF407 GFF408 - 'tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)' transl_table=11, at 123,014 to 123,487 GFF408 GFF409 - L-lactate dehydrogenase (EC 1.1.2.3), at 123,551 to 124,741 GFF409 Position (kb) 123 124Strain fitness (log2 ratio) -2 -1 0 1at 122.099 kb on - strand, within GFF406at 122.148 kb on - strand, within GFF406at 122.241 kb on - strand, within GFF406at 122.260 kb on + strand, within GFF406at 122.348 kb on + strand, within GFF406at 122.473 kb on + strand, within GFF406at 122.474 kb on - strand, within GFF406at 122.553 kb on - strand, within GFF406at 122.553 kb on - strand, within GFF406at 122.556 kb on + strand, within GFF406at 122.556 kb on + strand, within GFF406at 122.557 kb on - strand, within GFF406at 122.811 kb on + strand, within GFF406at 122.814 kb on + strand, within GFF406at 123.009 kb on - strand, within GFF407at 123.010 kb on + strand, within GFF407at 123.010 kb on + strand, within GFF407at 123.010 kb on + strand, within GFF407at 123.011 kb on - strand, within GFF407at 123.064 kb on - strand, within GFF408at 123.142 kb on + strand, within GFF408at 123.216 kb on + strand, within GFF408at 123.216 kb on + strand, within GFF408at 123.217 kb on - strand, within GFF408at 123.301 kb on - strand, within GFF408at 123.377 kb on - strand, within GFF408at 123.473 kb on + strandat 123.474 kb on - strandat 123.748 kb on - strand, within GFF409at 124.063 kb on + strand, within GFF409at 124.113 kb on + strand, within GFF409at 124.130 kb on + strand, within GFF409at 124.174 kb on + strand, within GFF409at 124.197 kb on + strand, within GFF409

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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122,099 - GFF406 0.20 +1.1
122,148 - GFF406 0.24 -0.1
122,241 - GFF406 0.33 -0.0
122,260 + GFF406 0.35 -0.2
122,348 + GFF406 0.43 -0.2
122,473 + GFF406 0.55 -0.6
122,474 - GFF406 0.55 -0.4
122,553 - GFF406 0.63 -0.1
122,553 - GFF406 0.63 +0.2
122,556 + GFF406 0.63 -0.5
122,556 + GFF406 0.63 +0.4
122,557 - GFF406 0.63 +0.1
122,811 + GFF406 0.87 +0.4
122,814 + GFF406 0.87 -0.5
123,009 - GFF407 0.68 -0.1
123,010 + GFF407 0.69 +0.8
123,010 + GFF407 0.69 +0.1
123,010 + GFF407 0.69 -0.7
123,011 - GFF407 0.70 -1.0
123,064 - GFF408 0.11 -0.4
123,142 + GFF408 0.27 -1.8
123,216 + GFF408 0.43 -1.1
123,216 + GFF408 0.43 -0.4
123,217 - GFF408 0.43 +0.6
123,301 - GFF408 0.61 +0.4
123,377 - GFF408 0.77 +0.7
123,473 + +0.1
123,474 - -0.1
123,748 - GFF409 0.17 +0.1
124,063 + GFF409 0.43 +0.3
124,113 + GFF409 0.47 -0.0
124,130 + GFF409 0.49 +1.2
124,174 + GFF409 0.52 -0.3
124,197 + GFF409 0.54 -0.1

Or see this region's nucleotide sequence