Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3845

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3843 and GFF3844 are separated by 268 nucleotidesGFF3844 and GFF3845 are separated by 35 nucleotidesGFF3845 and GFF3846 are separated by 489 nucleotides GFF3843 - Putative inner membrane protein, at 111,383 to 111,736 GFF3843 GFF3844 - putative cytoplasmic protein, at 112,005 to 112,274 GFF3844 GFF3845 - putative cytoplasmic protein, at 112,310 to 113,317 GFF3845 GFF3846 - Putative protease, at 113,807 to 115,168 GFF3846 Position (kb) 112 113 114Strain fitness (log2 ratio) -1 0 1at 111.353 kb on - strandat 111.692 kb on + strand, within GFF3843at 112.634 kb on - strand, within GFF3845at 112.754 kb on + strand, within GFF3845at 113.228 kb on + strandat 113.552 kb on - strandat 113.552 kb on - strandat 113.629 kb on + strandat 113.696 kb on - strandat 113.709 kb on + strandat 113.812 kb on + strandat 113.812 kb on + strandat 113.906 kb on - strandat 114.209 kb on - strand, within GFF3846at 114.282 kb on + strand, within GFF3846

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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111,353 - -0.8
111,692 + GFF3843 0.87 -0.4
112,634 - GFF3845 0.32 -0.8
112,754 + GFF3845 0.44 -0.9
113,228 + -0.2
113,552 - -1.0
113,552 - +1.0
113,629 + -0.7
113,696 - -0.1
113,709 + -0.1
113,812 + -1.2
113,812 + -0.9
113,906 - +0.8
114,209 - GFF3846 0.30 +0.2
114,282 + GFF3846 0.35 -0.0

Or see this region's nucleotide sequence