Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3832

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3830 and GFF3831 are separated by 262 nucleotidesGFF3831 and GFF3832 are separated by 125 nucleotidesGFF3832 and GFF3833 are separated by 98 nucleotidesGFF3833 and GFF3834 overlap by 14 nucleotides GFF3830 - Uncharacterized protein YehA precursor, at 101,013 to 102,020 GFF3830 GFF3831 - Uncharacterized protein YohN precursor, at 102,283 to 102,597 GFF3831 GFF3832 - FIG01045739: hypothetical protein, at 102,723 to 102,908 GFF3832 GFF3833 - Hydroxyethylthiazole kinase (EC 2.7.1.50), at 103,007 to 103,804 GFF3833 GFF3834 - Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7), at 103,791 to 104,591 GFF3834 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1at 102.369 kb on - strand, within GFF3831at 102.369 kb on - strand, within GFF3831at 102.381 kb on + strand, within GFF3831at 102.426 kb on + strand, within GFF3831at 102.429 kb on + strand, within GFF3831at 102.431 kb on + strand, within GFF3831at 102.446 kb on + strand, within GFF3831at 102.447 kb on - strand, within GFF3831at 102.505 kb on + strand, within GFF3831at 102.659 kb on + strandat 102.660 kb on - strandat 102.735 kb on - strandat 102.842 kb on + strand, within GFF3832at 102.843 kb on - strand, within GFF3832at 102.851 kb on + strand, within GFF3832at 103.045 kb on + strandat 103.046 kb on - strandat 103.046 kb on - strandat 103.087 kb on + strand, within GFF3833at 103.088 kb on - strand, within GFF3833at 103.213 kb on + strand, within GFF3833at 103.214 kb on - strand, within GFF3833at 103.214 kb on - strand, within GFF3833at 103.228 kb on - strand, within GFF3833at 103.442 kb on - strand, within GFF3833at 103.497 kb on + strand, within GFF3833at 103.498 kb on - strand, within GFF3833at 103.533 kb on - strand, within GFF3833at 103.596 kb on + strand, within GFF3833at 103.766 kb on + strandat 103.887 kb on + strand, within GFF3834at 103.888 kb on - strand, within GFF3834

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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102,369 - GFF3831 0.27 -0.8
102,369 - GFF3831 0.27 -0.9
102,381 + GFF3831 0.31 -0.4
102,426 + GFF3831 0.45 +0.2
102,429 + GFF3831 0.46 -0.7
102,431 + GFF3831 0.47 +0.2
102,446 + GFF3831 0.52 -0.5
102,447 - GFF3831 0.52 -0.6
102,505 + GFF3831 0.70 -0.2
102,659 + -1.2
102,660 - +0.6
102,735 - -0.4
102,842 + GFF3832 0.64 -0.3
102,843 - GFF3832 0.65 +0.2
102,851 + GFF3832 0.69 -1.3
103,045 + +0.2
103,046 - -0.5
103,046 - +0.2
103,087 + GFF3833 0.10 -0.8
103,088 - GFF3833 0.10 +0.0
103,213 + GFF3833 0.26 -2.1
103,214 - GFF3833 0.26 -0.2
103,214 - GFF3833 0.26 +0.5
103,228 - GFF3833 0.28 -0.6
103,442 - GFF3833 0.55 -0.2
103,497 + GFF3833 0.61 -0.1
103,498 - GFF3833 0.62 -0.2
103,533 - GFF3833 0.66 +0.8
103,596 + GFF3833 0.74 -0.3
103,766 + +0.0
103,887 + GFF3834 0.12 -0.6
103,888 - GFF3834 0.12 -0.2

Or see this region's nucleotide sequence