Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3825

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3824 and GFF3825 are separated by 83 nucleotidesGFF3825 and GFF3826 are separated by 277 nucleotidesGFF3826 and GFF3827 are separated by 278 nucleotides GFF3824 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 93,080 to 95,194 GFF3824 GFF3825 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 95,278 to 96,387 GFF3825 GFF3826 - FIG00510335: hypothetical protein, at 96,665 to 96,946 GFF3826 GFF3827 - probable fimbrial chain protein stcA, at 97,225 to 97,755 GFF3827 Position (kb) 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 95.154 kb on - strandat 95.233 kb on + strandat 95.419 kb on - strand, within GFF3825at 95.419 kb on - strand, within GFF3825at 95.419 kb on - strand, within GFF3825at 95.505 kb on + strand, within GFF3825at 95.508 kb on + strand, within GFF3825at 95.542 kb on + strand, within GFF3825at 95.784 kb on + strand, within GFF3825at 95.964 kb on + strand, within GFF3825at 96.114 kb on + strand, within GFF3825at 96.115 kb on - strand, within GFF3825at 96.115 kb on - strand, within GFF3825at 96.115 kb on - strand, within GFF3825at 96.228 kb on + strand, within GFF3825at 96.228 kb on + strand, within GFF3825at 96.302 kb on - strandat 96.386 kb on - strandat 96.434 kb on - strandat 96.687 kb on + strandat 96.693 kb on + strandat 96.829 kb on + strand, within GFF3826

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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95,154 - -0.6
95,233 + -1.6
95,419 - GFF3825 0.13 +2.5
95,419 - GFF3825 0.13 -1.2
95,419 - GFF3825 0.13 +0.1
95,505 + GFF3825 0.20 -0.6
95,508 + GFF3825 0.21 -0.9
95,542 + GFF3825 0.24 -0.8
95,784 + GFF3825 0.46 -0.7
95,964 + GFF3825 0.62 -0.5
96,114 + GFF3825 0.75 -0.5
96,115 - GFF3825 0.75 -0.3
96,115 - GFF3825 0.75 -1.1
96,115 - GFF3825 0.75 -2.8
96,228 + GFF3825 0.86 -0.2
96,228 + GFF3825 0.86 +0.2
96,302 - +0.0
96,386 - -0.1
96,434 - -0.8
96,687 + -0.6
96,693 + +0.2
96,829 + GFF3826 0.58 -0.5

Or see this region's nucleotide sequence