Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2937

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2935 and GFF2936 overlap by 1 nucleotidesGFF2936 and GFF2937 are separated by 18 nucleotidesGFF2937 and GFF2938 are separated by 4 nucleotidesGFF2938 and GFF2939 are separated by 7 nucleotides GFF2935 - Uncharacterized protein YrbB, at 18,126 to 18,422 GFF2935 GFF2936 - Uncharacterized ABC transporter, auxiliary component YrbC, at 18,422 to 19,057 GFF2936 GFF2937 - Uncharacterized ABC transporter, periplasmic component YrbD, at 19,076 to 19,627 GFF2937 GFF2938 - Uncharacterized ABC transporter, permease component YrbE, at 19,632 to 20,414 GFF2938 GFF2939 - Uncharacterized ABC transporter, ATP-binding protein YrbF, at 20,422 to 21,234 GFF2939 Position (kb) 19 20Strain fitness (log2 ratio) -2 -1 0 1at 18.079 kb on + strandat 18.100 kb on - strandat 18.100 kb on - strandat 18.127 kb on + strandat 18.127 kb on + strandat 18.128 kb on - strandat 18.159 kb on - strand, within GFF2935at 18.160 kb on + strand, within GFF2935at 18.160 kb on + strand, within GFF2935at 18.163 kb on - strand, within GFF2935at 18.163 kb on - strand, within GFF2935at 18.163 kb on - strand, within GFF2935at 18.163 kb on - strand, within GFF2935at 18.273 kb on + strand, within GFF2935at 18.273 kb on + strand, within GFF2935at 18.423 kb on + strandat 18.461 kb on - strandat 18.461 kb on - strandat 18.568 kb on - strand, within GFF2936at 18.724 kb on - strand, within GFF2936at 18.724 kb on - strand, within GFF2936at 18.814 kb on - strand, within GFF2936at 18.844 kb on - strand, within GFF2936at 19.011 kb on - strandat 19.078 kb on - strandat 19.173 kb on + strand, within GFF2937at 19.192 kb on + strand, within GFF2937at 19.352 kb on - strand, within GFF2937at 19.357 kb on + strand, within GFF2937at 19.359 kb on + strand, within GFF2937at 19.360 kb on - strand, within GFF2937at 19.418 kb on - strand, within GFF2937at 19.529 kb on - strand, within GFF2937at 19.751 kb on - strand, within GFF2938at 19.827 kb on - strand, within GFF2938at 19.934 kb on + strand, within GFF2938at 19.934 kb on + strand, within GFF2938at 19.944 kb on + strand, within GFF2938at 20.174 kb on - strand, within GFF2938at 20.243 kb on + strand, within GFF2938at 20.423 kb on + strandat 20.423 kb on + strandat 20.424 kb on - strandat 20.605 kb on - strand, within GFF2939

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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18,079 + -0.2
18,100 - -0.2
18,100 - +0.3
18,127 + +0.2
18,127 + -0.4
18,128 - +0.3
18,159 - GFF2935 0.11 -0.9
18,160 + GFF2935 0.11 -0.6
18,160 + GFF2935 0.11 +0.2
18,163 - GFF2935 0.12 -0.4
18,163 - GFF2935 0.12 -0.2
18,163 - GFF2935 0.12 -0.7
18,163 - GFF2935 0.12 +0.0
18,273 + GFF2935 0.49 -0.5
18,273 + GFF2935 0.49 -2.4
18,423 + -0.8
18,461 - -1.8
18,461 - -0.2
18,568 - GFF2936 0.23 +0.0
18,724 - GFF2936 0.47 -1.6
18,724 - GFF2936 0.47 -0.4
18,814 - GFF2936 0.62 +1.1
18,844 - GFF2936 0.66 +0.2
19,011 - +1.0
19,078 - +0.1
19,173 + GFF2937 0.18 -0.5
19,192 + GFF2937 0.21 -0.6
19,352 - GFF2937 0.50 -0.3
19,357 + GFF2937 0.51 -0.2
19,359 + GFF2937 0.51 -0.7
19,360 - GFF2937 0.51 -1.2
19,418 - GFF2937 0.62 -0.9
19,529 - GFF2937 0.82 -0.9
19,751 - GFF2938 0.15 -0.1
19,827 - GFF2938 0.25 -0.6
19,934 + GFF2938 0.39 -0.7
19,934 + GFF2938 0.39 -1.0
19,944 + GFF2938 0.40 -0.3
20,174 - GFF2938 0.69 -1.1
20,243 + GFF2938 0.78 +0.8
20,423 + -0.5
20,423 + -0.4
20,424 - -0.4
20,605 - GFF2939 0.23 +0.1

Or see this region's nucleotide sequence