Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2859

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2858 and GFF2859 are separated by 280 nucleotidesGFF2859 and GFF2860 are separated by 286 nucleotidesGFF2860 and GFF2861 are separated by 329 nucleotides GFF2858 - G-nucleotide exchange factor SopE, at 377,284 to 378,006 GFF2858 GFF2859 - hypothetical protein, at 378,287 to 378,418 GFF2859 GFF2860 - FIG074102: hypothetical protein, at 378,705 to 379,085 GFF2860 GFF2861 - FIG01045929: hypothetical protein, at 379,415 to 379,891 GFF2861 Position (kb) 378 379Strain fitness (log2 ratio) -2 -1 0 1at 377.448 kb on + strand, within GFF2858at 377.625 kb on + strand, within GFF2858at 379.316 kb on + strandat 379.348 kb on + strandat 379.348 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
remove
377,448 + GFF2858 0.23 -0.2
377,625 + GFF2858 0.47 -1.0
379,316 + -0.3
379,348 + -2.0
379,348 + -0.5

Or see this region's nucleotide sequence