Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2717

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2716 and GFF2717 are separated by 237 nucleotidesGFF2717 and GFF2718 overlap by 4 nucleotidesGFF2718 and GFF2719 are separated by 86 nucleotides GFF2716 - Possible protease sohB (EC 3.4.21.-), at 238,703 to 239,749 GFF2716 GFF2717 - YciK-like oxidoreductase, at 239,987 to 240,748 GFF2717 GFF2718 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 240,745 to 241,335 GFF2718 GFF2719 - Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70), at 241,422 to 242,297 GFF2719 Position (kb) 239 240 241Strain fitness (log2 ratio) -1 0 1at 239.092 kb on + strand, within GFF2716at 239.105 kb on - strand, within GFF2716at 239.164 kb on + strand, within GFF2716at 239.165 kb on - strand, within GFF2716at 239.209 kb on + strand, within GFF2716at 239.209 kb on + strand, within GFF2716at 239.209 kb on + strand, within GFF2716at 239.211 kb on + strand, within GFF2716at 239.436 kb on - strand, within GFF2716at 239.436 kb on - strand, within GFF2716at 239.436 kb on - strand, within GFF2716at 239.516 kb on - strand, within GFF2716at 239.656 kb on + strandat 239.765 kb on + strandat 239.791 kb on - strandat 239.982 kb on + strandat 240.028 kb on + strandat 240.081 kb on - strand, within GFF2717at 240.255 kb on - strand, within GFF2717at 240.433 kb on + strand, within GFF2717at 240.480 kb on - strand, within GFF2717at 240.782 kb on + strandat 240.834 kb on + strand, within GFF2718at 240.859 kb on - strand, within GFF2718at 240.936 kb on + strand, within GFF2718at 241.059 kb on + strand, within GFF2718at 241.110 kb on + strand, within GFF2718at 241.135 kb on + strand, within GFF2718at 241.136 kb on - strand, within GFF2718at 241.136 kb on - strand, within GFF2718at 241.147 kb on + strand, within GFF2718at 241.153 kb on + strand, within GFF2718at 241.154 kb on - strand, within GFF2718at 241.157 kb on + strand, within GFF2718at 241.216 kb on - strand, within GFF2718at 241.219 kb on - strand, within GFF2718at 241.330 kb on + strandat 241.406 kb on + strandat 241.407 kb on - strandat 241.465 kb on - strandat 241.465 kb on - strandat 241.583 kb on - strand, within GFF2719at 241.748 kb on - strand, within GFF2719

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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239,092 + GFF2716 0.37 +0.0
239,105 - GFF2716 0.38 +0.3
239,164 + GFF2716 0.44 +0.5
239,165 - GFF2716 0.44 -0.3
239,209 + GFF2716 0.48 -0.9
239,209 + GFF2716 0.48 -0.3
239,209 + GFF2716 0.48 -0.4
239,211 + GFF2716 0.49 +1.5
239,436 - GFF2716 0.70 +1.1
239,436 - GFF2716 0.70 +0.2
239,436 - GFF2716 0.70 +0.3
239,516 - GFF2716 0.78 -1.1
239,656 + +0.1
239,765 + -0.0
239,791 - +0.1
239,982 + +0.8
240,028 + +0.7
240,081 - GFF2717 0.12 -1.0
240,255 - GFF2717 0.35 -1.0
240,433 + GFF2717 0.59 +0.3
240,480 - GFF2717 0.65 -0.5
240,782 + +0.9
240,834 + GFF2718 0.15 +0.9
240,859 - GFF2718 0.19 +0.2
240,936 + GFF2718 0.32 +1.4
241,059 + GFF2718 0.53 +0.1
241,110 + GFF2718 0.62 -0.6
241,135 + GFF2718 0.66 -0.5
241,136 - GFF2718 0.66 +0.3
241,136 - GFF2718 0.66 -0.1
241,147 + GFF2718 0.68 +0.2
241,153 + GFF2718 0.69 +0.2
241,154 - GFF2718 0.69 -0.3
241,157 + GFF2718 0.70 -0.7
241,216 - GFF2718 0.80 -1.0
241,219 - GFF2718 0.80 +1.0
241,330 + +0.6
241,406 + +0.3
241,407 - +0.1
241,465 - +0.5
241,465 - -0.2
241,583 - GFF2719 0.18 -1.7
241,748 - GFF2719 0.37 +1.1

Or see this region's nucleotide sequence