Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2716 and GFF2717 are separated by 237 nucleotides GFF2717 and GFF2718 overlap by 4 nucleotides GFF2718 and GFF2719 are separated by 86 nucleotides
GFF2716 - Possible protease sohB (EC 3.4.21.-), at 238,703 to 239,749
GFF2716
GFF2717 - YciK-like oxidoreductase, at 239,987 to 240,748
GFF2717
GFF2718 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 240,745 to 241,335
GFF2718
GFF2719 - Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70), at 241,422 to 242,297
GFF2719
Position (kb) 239
240
241 Strain fitness (log2 ratio) -1
0
1 at 239.092 kb on + strand, within GFF2716 at 239.105 kb on - strand, within GFF2716 at 239.164 kb on + strand, within GFF2716 at 239.165 kb on - strand, within GFF2716 at 239.209 kb on + strand, within GFF2716 at 239.209 kb on + strand, within GFF2716 at 239.209 kb on + strand, within GFF2716 at 239.211 kb on + strand, within GFF2716 at 239.436 kb on - strand, within GFF2716 at 239.436 kb on - strand, within GFF2716 at 239.436 kb on - strand, within GFF2716 at 239.516 kb on - strand, within GFF2716 at 239.656 kb on + strand at 239.765 kb on + strand at 239.791 kb on - strand at 239.982 kb on + strand at 240.028 kb on + strand at 240.081 kb on - strand, within GFF2717 at 240.255 kb on - strand, within GFF2717 at 240.433 kb on + strand, within GFF2717 at 240.480 kb on - strand, within GFF2717 at 240.782 kb on + strand at 240.834 kb on + strand, within GFF2718 at 240.859 kb on - strand, within GFF2718 at 240.936 kb on + strand, within GFF2718 at 241.059 kb on + strand, within GFF2718 at 241.110 kb on + strand, within GFF2718 at 241.135 kb on + strand, within GFF2718 at 241.136 kb on - strand, within GFF2718 at 241.136 kb on - strand, within GFF2718 at 241.147 kb on + strand, within GFF2718 at 241.153 kb on + strand, within GFF2718 at 241.154 kb on - strand, within GFF2718 at 241.157 kb on + strand, within GFF2718 at 241.216 kb on - strand, within GFF2718 at 241.219 kb on - strand, within GFF2718 at 241.330 kb on + strand at 241.406 kb on + strand at 241.407 kb on - strand at 241.465 kb on - strand at 241.465 kb on - strand at 241.583 kb on - strand, within GFF2719 at 241.748 kb on - strand, within GFF2719
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI remove 239,092 + GFF2716 0.37 +0.0 239,105 - GFF2716 0.38 +0.3 239,164 + GFF2716 0.44 +0.5 239,165 - GFF2716 0.44 -0.3 239,209 + GFF2716 0.48 -0.9 239,209 + GFF2716 0.48 -0.3 239,209 + GFF2716 0.48 -0.4 239,211 + GFF2716 0.49 +1.5 239,436 - GFF2716 0.70 +1.1 239,436 - GFF2716 0.70 +0.2 239,436 - GFF2716 0.70 +0.3 239,516 - GFF2716 0.78 -1.1 239,656 + +0.1 239,765 + -0.0 239,791 - +0.1 239,982 + +0.8 240,028 + +0.7 240,081 - GFF2717 0.12 -1.0 240,255 - GFF2717 0.35 -1.0 240,433 + GFF2717 0.59 +0.3 240,480 - GFF2717 0.65 -0.5 240,782 + +0.9 240,834 + GFF2718 0.15 +0.9 240,859 - GFF2718 0.19 +0.2 240,936 + GFF2718 0.32 +1.4 241,059 + GFF2718 0.53 +0.1 241,110 + GFF2718 0.62 -0.6 241,135 + GFF2718 0.66 -0.5 241,136 - GFF2718 0.66 +0.3 241,136 - GFF2718 0.66 -0.1 241,147 + GFF2718 0.68 +0.2 241,153 + GFF2718 0.69 +0.2 241,154 - GFF2718 0.69 -0.3 241,157 + GFF2718 0.70 -0.7 241,216 - GFF2718 0.80 -1.0 241,219 - GFF2718 0.80 +1.0 241,330 + +0.6 241,406 + +0.3 241,407 - +0.1 241,465 - +0.5 241,465 - -0.2 241,583 - GFF2719 0.18 -1.7 241,748 - GFF2719 0.37 +1.1
Or see this region's nucleotide sequence