Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2704

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2701 and GFF2702 are separated by 258 nucleotidesGFF2702 and GFF2703 are separated by 119 nucleotidesGFF2703 and GFF2704 overlap by 1 nucleotidesGFF2704 and GFF2705 are separated by 130 nucleotides GFF2701 - Transcriptional regulatory protein YciT, at 224,530 to 225,282 GFF2701 GFF2702 - Osmotically inducible lipoprotein B precursor, at 225,541 to 225,759 GFF2702 GFF2703 - Translation initiation factor SUI1-related protein, at 225,879 to 226,205 GFF2703 GFF2704 - 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11, at 226,205 to 227,002 GFF2704 GFF2705 - Heat shock (predicted periplasmic) protein YciM, precursor, at 227,133 to 228,302 GFF2705 Position (kb) 226 227 228Strain fitness (log2 ratio) -1 0 1at 225.491 kb on + strandat 226.113 kb on - strand, within GFF2703at 226.178 kb on - strandat 226.234 kb on + strandat 226.293 kb on + strand, within GFF2704at 226.385 kb on + strand, within GFF2704at 226.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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225,491 + +0.0
226,113 - GFF2703 0.72 -0.1
226,178 - +0.2
226,234 + +0.1
226,293 + GFF2704 0.11 +0.7
226,385 + GFF2704 0.23 +0.7
226,934 - +0.3

Or see this region's nucleotide sequence