Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2351

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2349 and GFF2350 are separated by 15 nucleotidesGFF2350 and GFF2351 are separated by 46 nucleotidesGFF2351 and GFF2352 are separated by 373 nucleotides GFF2349 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 144,506 to 145,138 GFF2349 GFF2350 - Putative inner membrane protein, at 145,154 to 145,513 GFF2350 GFF2351 - tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35), at 145,560 to 146,660 GFF2351 GFF2352 - Outer membrane vitamin B12 receptor BtuB, at 147,034 to 148,878 GFF2352 Position (kb) 145 146 147Strain fitness (log2 ratio) -2 -1 0 1at 144.800 kb on - strand, within GFF2349at 144.917 kb on + strand, within GFF2349at 144.978 kb on + strand, within GFF2349at 144.978 kb on + strand, within GFF2349at 144.979 kb on - strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 145.089 kb on - strandat 145.091 kb on + strandat 145.119 kb on + strandat 145.152 kb on + strandat 145.181 kb on - strandat 145.217 kb on - strand, within GFF2350at 145.274 kb on - strand, within GFF2350at 145.293 kb on + strand, within GFF2350at 145.294 kb on - strand, within GFF2350at 145.295 kb on + strand, within GFF2350at 145.295 kb on + strand, within GFF2350at 145.295 kb on + strand, within GFF2350at 145.296 kb on - strand, within GFF2350at 145.325 kb on - strand, within GFF2350at 145.327 kb on + strand, within GFF2350at 145.328 kb on - strand, within GFF2350at 145.328 kb on - strand, within GFF2350at 145.328 kb on - strand, within GFF2350at 145.380 kb on + strand, within GFF2350at 145.385 kb on + strand, within GFF2350at 145.385 kb on + strand, within GFF2350at 145.385 kb on + strand, within GFF2350at 145.386 kb on - strand, within GFF2350at 145.386 kb on - strand, within GFF2350at 145.387 kb on + strand, within GFF2350at 145.387 kb on + strand, within GFF2350at 145.388 kb on - strand, within GFF2350at 145.477 kb on + strand, within GFF2350at 145.535 kb on + strandat 145.535 kb on + strandat 145.554 kb on + strandat 145.555 kb on - strandat 145.593 kb on - strandat 145.601 kb on + strandat 145.601 kb on + strandat 145.603 kb on + strandat 145.706 kb on + strand, within GFF2351at 145.912 kb on + strand, within GFF2351at 146.008 kb on + strand, within GFF2351at 146.009 kb on - strand, within GFF2351at 146.072 kb on + strand, within GFF2351at 146.120 kb on - strand, within GFF2351at 146.160 kb on - strand, within GFF2351at 146.160 kb on - strand, within GFF2351at 146.285 kb on + strand, within GFF2351at 146.290 kb on + strand, within GFF2351at 146.332 kb on + strand, within GFF2351at 146.352 kb on - strand, within GFF2351at 146.405 kb on + strand, within GFF2351at 146.474 kb on + strand, within GFF2351at 146.474 kb on + strand, within GFF2351at 146.474 kb on + strand, within GFF2351at 146.475 kb on - strand, within GFF2351at 146.482 kb on + strand, within GFF2351at 146.526 kb on - strand, within GFF2351at 146.526 kb on - strand, within GFF2351at 146.554 kb on - strandat 146.588 kb on + strandat 146.589 kb on - strandat 146.629 kb on + strandat 146.629 kb on + strandat 146.630 kb on - strandat 146.630 kb on - strandat 146.630 kb on - strandat 146.630 kb on - strandat 146.630 kb on - strandat 146.723 kb on - strandat 146.805 kb on + strandat 146.805 kb on + strandat 146.806 kb on - strandat 146.806 kb on - strandat 146.871 kb on - strandat 146.871 kb on - strandat 146.985 kb on - strandat 147.015 kb on - strandat 147.015 kb on - strandat 147.016 kb on + strandat 147.016 kb on + strandat 147.320 kb on + strand, within GFF2352at 147.320 kb on + strand, within GFF2352at 147.321 kb on - strand, within GFF2352at 147.321 kb on - strand, within GFF2352at 147.418 kb on + strand, within GFF2352at 147.418 kb on + strand, within GFF2352at 147.418 kb on + strand, within GFF2352at 147.477 kb on + strand, within GFF2352at 147.483 kb on + strand, within GFF2352at 147.534 kb on + strand, within GFF2352at 147.534 kb on + strand, within GFF2352

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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144,800 - GFF2349 0.46 +0.2
144,917 + GFF2349 0.65 +0.3
144,978 + GFF2349 0.75 -0.2
144,978 + GFF2349 0.75 -0.1
144,979 - GFF2349 0.75 +0.7
144,982 + GFF2349 0.75 +0.7
144,982 + GFF2349 0.75 +1.3
144,982 + GFF2349 0.75 +0.3
145,089 - -0.1
145,091 + +0.1
145,119 + +0.1
145,152 + -0.5
145,181 - -0.5
145,217 - GFF2350 0.17 -1.1
145,274 - GFF2350 0.33 -0.6
145,293 + GFF2350 0.39 -0.4
145,294 - GFF2350 0.39 -0.6
145,295 + GFF2350 0.39 -0.4
145,295 + GFF2350 0.39 -0.1
145,295 + GFF2350 0.39 -0.6
145,296 - GFF2350 0.39 -1.8
145,325 - GFF2350 0.47 -0.3
145,327 + GFF2350 0.48 -1.1
145,328 - GFF2350 0.48 +0.0
145,328 - GFF2350 0.48 -0.3
145,328 - GFF2350 0.48 -0.2
145,380 + GFF2350 0.63 -0.8
145,385 + GFF2350 0.64 -0.5
145,385 + GFF2350 0.64 -0.7
145,385 + GFF2350 0.64 -0.1
145,386 - GFF2350 0.64 -0.1
145,386 - GFF2350 0.64 -0.5
145,387 + GFF2350 0.65 -0.4
145,387 + GFF2350 0.65 -0.3
145,388 - GFF2350 0.65 +0.0
145,477 + GFF2350 0.90 -0.5
145,535 + +0.7
145,535 + -1.4
145,554 + -0.6
145,555 - -0.9
145,593 - +0.1
145,601 + -1.2
145,601 + +0.6
145,603 + -0.2
145,706 + GFF2351 0.13 -0.3
145,912 + GFF2351 0.32 -0.6
146,008 + GFF2351 0.41 -2.5
146,009 - GFF2351 0.41 -0.5
146,072 + GFF2351 0.47 -0.2
146,120 - GFF2351 0.51 -0.1
146,160 - GFF2351 0.54 -0.3
146,160 - GFF2351 0.54 -0.9
146,285 + GFF2351 0.66 -0.9
146,290 + GFF2351 0.66 -0.9
146,332 + GFF2351 0.70 -0.7
146,352 - GFF2351 0.72 -1.4
146,405 + GFF2351 0.77 +0.0
146,474 + GFF2351 0.83 +0.7
146,474 + GFF2351 0.83 -0.5
146,474 + GFF2351 0.83 -0.3
146,475 - GFF2351 0.83 +0.0
146,482 + GFF2351 0.84 -0.1
146,526 - GFF2351 0.88 -0.4
146,526 - GFF2351 0.88 -1.5
146,554 - -0.3
146,588 + -1.0
146,589 - -1.3
146,629 + +0.0
146,629 + -0.4
146,630 - -0.5
146,630 - +0.3
146,630 - -0.5
146,630 - -0.2
146,630 - -0.0
146,723 - -0.2
146,805 + -1.1
146,805 + +0.0
146,806 - -0.7
146,806 - -0.3
146,871 - -0.2
146,871 - -0.1
146,985 - -0.5
147,015 - -0.5
147,015 - +0.3
147,016 + -1.7
147,016 + -0.3
147,320 + GFF2352 0.16 +0.5
147,320 + GFF2352 0.16 -0.3
147,321 - GFF2352 0.16 -0.3
147,321 - GFF2352 0.16 -1.6
147,418 + GFF2352 0.21 -1.4
147,418 + GFF2352 0.21 -0.3
147,418 + GFF2352 0.21 -1.7
147,477 + GFF2352 0.24 -1.8
147,483 + GFF2352 0.24 -0.2
147,534 + GFF2352 0.27 -1.1
147,534 + GFF2352 0.27 -1.0

Or see this region's nucleotide sequence