Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2094

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2093 and GFF2094 overlap by 4 nucleotidesGFF2094 and GFF2095 are separated by 44 nucleotides GFF2093 - Alpha-ketoglutarate permease, at 1,008 to 2,309 GFF2093 GFF2094 - Putative outer membrane lipoprotein, at 2,306 to 2,629 GFF2094 GFF2095 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 2,674 to 4,029 GFF2095 Position (kb) 2 3Strain fitness (log2 ratio) -1 0 1at 1.356 kb on + strand, within GFF2093at 1.405 kb on + strand, within GFF2093at 1.454 kb on + strand, within GFF2093at 1.455 kb on - strand, within GFF2093at 1.455 kb on - strand, within GFF2093at 1.791 kb on - strand, within GFF2093at 1.803 kb on + strand, within GFF2093at 1.803 kb on + strand, within GFF2093at 1.803 kb on + strand, within GFF2093at 1.804 kb on - strand, within GFF2093at 1.804 kb on - strand, within GFF2093at 1.804 kb on - strand, within GFF2093at 1.804 kb on - strand, within GFF2093at 1.835 kb on + strand, within GFF2093at 1.836 kb on - strand, within GFF2093at 1.836 kb on - strand, within GFF2093at 1.836 kb on - strand, within GFF2093at 2.042 kb on - strand, within GFF2093at 2.142 kb on + strand, within GFF2093at 2.182 kb on - strandat 2.233 kb on - strandat 2.300 kb on - strandat 2.307 kb on + strandat 2.329 kb on + strandat 2.478 kb on - strand, within GFF2094at 2.497 kb on - strand, within GFF2094at 2.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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1,356 + GFF2093 0.27 -0.0
1,405 + GFF2093 0.30 -0.2
1,454 + GFF2093 0.34 -1.5
1,455 - GFF2093 0.34 -0.5
1,455 - GFF2093 0.34 -0.2
1,791 - GFF2093 0.60 -1.2
1,803 + GFF2093 0.61 -0.2
1,803 + GFF2093 0.61 -0.8
1,803 + GFF2093 0.61 +0.5
1,804 - GFF2093 0.61 -1.1
1,804 - GFF2093 0.61 -0.1
1,804 - GFF2093 0.61 -0.3
1,804 - GFF2093 0.61 -0.7
1,835 + GFF2093 0.64 +0.7
1,836 - GFF2093 0.64 -0.2
1,836 - GFF2093 0.64 -0.3
1,836 - GFF2093 0.64 -0.5
2,042 - GFF2093 0.79 +0.2
2,142 + GFF2093 0.87 -1.2
2,182 - +0.2
2,233 - +0.2
2,300 - +0.3
2,307 + +0.4
2,329 + -0.5
2,478 - GFF2094 0.53 +0.3
2,497 - GFF2094 0.59 -1.7
2,609 - -0.2

Or see this region's nucleotide sequence